PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.18G005100.2.p | ||||||||
Common Name | GLYMA_18G005100, LOC100791430 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | CAMTA | ||||||||
Protein Properties | Length: 963aa MW: 108037 Da PI: 5.2761 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 170.5 | 2.6e-53 | 14 | 129 | 3 | 117 |
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseen 91 +e k+rwlk+ e++ iL n+++ e+t++++++p gsl+L+nr+++r+frkDG++w+kkkdgktv E+he+LKvg+ve+l+cyYah+een Glyma.18G005100.2.p 14 QEaKRRWLKPVEVLYILRNHDQCEFTHQPPHQPAGGSLLLFNRRIMRFFRKDGHNWRKKKDGKTVGEAHERLKVGNVEILNCYYAHGEEN 103 56699************************************************************************************* PP CG-1 92 ptfqrrcywlLeeelekivlvhylev 117 +tfqrr+yw+Le e+++ivlvhy+e+ Glyma.18G005100.2.p 104 RTFQRRSYWMLEPEYDHIVLVHYRET 129 ************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 76.25 | 9 | 135 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 3.3E-69 | 12 | 130 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 3.3E-47 | 15 | 128 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF01833 | 9.2E-7 | 386 | 457 | IPR002909 | IPT domain |
Gene3D | G3DSA:2.60.40.10 | 5.1E-6 | 386 | 458 | IPR013783 | Immunoglobulin-like fold |
SuperFamily | SSF81296 | 2.38E-16 | 386 | 470 | IPR014756 | Immunoglobulin E-set |
CDD | cd00102 | 2.71E-4 | 386 | 470 | No hit | No description |
Gene3D | G3DSA:1.25.40.20 | 4.1E-15 | 581 | 675 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 15.141 | 581 | 673 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 1.12E-15 | 585 | 675 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 2.69E-13 | 601 | 673 | No hit | No description |
Pfam | PF12796 | 2.4E-8 | 602 | 675 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50088 | 11.06 | 614 | 646 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 0.0038 | 614 | 643 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 1500 | 653 | 682 | IPR002110 | Ankyrin repeat |
SMART | SM00015 | 68 | 731 | 753 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 8.078 | 732 | 761 | IPR000048 | IQ motif, EF-hand binding site |
SuperFamily | SSF52540 | 1.78E-6 | 785 | 844 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
SMART | SM00015 | 6.7 | 792 | 814 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 7.675 | 793 | 822 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.024 | 796 | 813 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 7.2E-4 | 815 | 837 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 9.304 | 816 | 840 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 2.3E-4 | 818 | 837 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001077 | Molecular Function | transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 963 aa Download sequence Send to blast |
MPPGLEYNID DLFQEAKRRW LKPVEVLYIL RNHDQCEFTH QPPHQPAGGS LLLFNRRIMR 60 FFRKDGHNWR KKKDGKTVGE AHERLKVGNV EILNCYYAHG EENRTFQRRS YWMLEPEYDH 120 IVLVHYRETS EGKSKSEHVT QLSSGSSPVF SQSHSSYTTH NPGTASMFGD SCEPNQKFSS 180 SGSLEDTSEA QALRQLEEQL SLNEDIFNEI ALDLIPGQDQ RVVYKQDNSV ALSGPNDPGQ 240 PCDGYNGRED DSGTYYHDFL DDCPGGNEKT IYWTEVLESC KPLSVTKLPD QHAYDAIENG 300 KSLFSSGRGM IANREKNQWL NSNSNNVENS VFLFPQDIGV KFPPYSMVET PGTNYDYYET 360 CFDQFQNQEP LGVDSSFTVV QKQKFTIRAV SPEYCYATET TKVIIIGSFL CHDSDSTWAC 420 MFGDVEVPAE IIQDGVICCE APSYLLGKVN LCVTSGNRVP CSEVRGFEFR NKTTSCTRCN 480 SLETEGSKSL EDLLLLVRFA EMLLSASTTK DDRIESGSYL STEQKDDDDS WSHIIIDTLL 540 DGTRTSSDTV NWLLEELLKD KLQLWLSNRR DEGTGCSFSR KEQGIIHMIS GLGFEWALSP 600 ILSCGVNINF RDINGWTALH WAARFGREKM VASLIASGAS AGAVTDPSSQ DPTGKTAASI 660 AASHGHKGLA GYLSEVDLTS HLSSLTLEES ELSKGSSELE AELTVSSVSK ENLVASEDQV 720 SLQAFLDAVR NAAQAAARIQ AAFRAHSFRK RKEREAAADA GLDGYCIDAG SIDNNISVLS 780 AVSKLSSQSC RDYNLAALSI QKKYRGWKGR KEFLALRQKV VKIQACVRGY QVRKQYKLIL 840 WAVGILDKVV LRWRRKRIGI RSVRQEMESN EEESDDEDFL SVFRKEKVNA AIEKALKQVL 900 SMVHSSGARQ QYRRLLLLYR QAKAKTERGS TSDEAPLSTS EEEVSNMEDD DLCQFWETFW 960 PS* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.26085 | 0.0 | hypocotyl| leaf| pod |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. {ECO:0000269|PubMed:12218065}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.18G005100.2.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 1e-179 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003552779.1 | 0.0 | calmodulin-binding transcription activator 4 | ||||
Refseq | XP_028212348.1 | 0.0 | calmodulin-binding transcription activator 4-like | ||||
Swissprot | Q9FYG2 | 0.0 | CMTA4_ARATH; Calmodulin-binding transcription activator 4 | ||||
TrEMBL | A0A0B2QVH0 | 0.0 | A0A0B2QVH0_GLYSO; Calmodulin-binding transcription activator 4 | ||||
TrEMBL | K7MP75 | 0.0 | K7MP75_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA18G00840.2 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67310.1 | 0.0 | Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains |
Link Out ? help Back to Top | |
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Phytozome | Glyma.18G005100.2.p |
Entrez Gene | 100791430 |
Publications ? help Back to Top | |||
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