PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

MIKC_MADS

Protein Properties

Length: 214aa MW: 24249.6 Da PI: 7.9342

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.18G004700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	95.7	2e-30	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gk ye++s Glyma.18G004700.1.p 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKQYEFCS 59 79***********************************************96 PP
2	K-box	69.4	1.2e-23	84	144	9	69
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskK 69 ++ea + s+qqe+ +Lk+++e Lqr+qR+l+GedL++Ls keL++Le+qL++slk+iRs + Glyma.18G004700.1.p 84 TKEALELSSQQEYLRLKARYEALQRSQRNLMGEDLGPLSSKELESLERQLDSSLKQIRSIR 144 556666789*************************************************965 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	32.534	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	2.8E-39	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	3.79E-33	2	78	IPR002100	Transcription factor, MADS-box
CDD	cd00265	1.34E-44	2	76	No hit	No description
PRINTS	PR00404	5.9E-32	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.0E-25	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.9E-32	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.9E-32	38	59	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS51297	10.579	89	183	IPR002487	Transcription factor, K-box
Pfam	PF01486	7.5E-18	91	144	IPR002487	Transcription factor, K-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 214 aa Download sequence Send to blast
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKQYEFCSG 60 SSMLKTLERY QKCNYGAPED NVATKEALEL SSQQEYLRLK ARYEALQRSQ RNLMGEDLGP 120 LSSKELESLE RQLDSSLKQI RSIRLEEFQI NPLQLNPSAE DMGYGRHPGQ PQGHALFQPL 180 ECEPTLQIGY HPDPVSVVTE GPSMNNYMAG WLP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4ox0_A	4e-32	75	154	1	84	Developmental protein SEPALLATA 3
4ox0_B	4e-32	75	154	1	84	Developmental protein SEPALLATA 3
4ox0_C	4e-32	75	154	1	84	Developmental protein SEPALLATA 3
4ox0_D	4e-32	75	154	1	84	Developmental protein SEPALLATA 3
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.19578	0.0	cotyledon\| flower\| seed coat

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in flowers and seeds. {ECO:0000269\|Ref.1}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in flower development. {ECO:0000250\|UniProtKB:Q0HA25}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.18G004700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU252566	0.0	EU252566.1 Glycine max agamous-like 9 protein 1 (AGL9L-1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028213043.1	1e-151	MADS-box transcription factor 1-like isoform X2
Swissprot	Q8LLR0	1e-127	MADS4_VITVI; Agamous-like MADS-box protein MADS4
TrEMBL	A0A368UGH5	1e-155	A0A368UGH5_SOYBN; Uncharacterized protein
STRING	GLYMA18G00801.1	1e-154	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF229	32	178
Representative plant	OGRP16	17	761

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G24260.3	1e-108	MIKC_MADS family protein

Link Out ? help Back to Top
Phytozome	Glyma.18G004700.1.p

Publications ? help Back to Top
Jaillon O, et al. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature, 2007. 449(7161): p. 463-7 [PMID:17721507] Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ Genome-wide analysis of MIKCC-type MADS box genes in grapevine. Plant Physiol., 2009. 149(1): p. 354-69 [PMID:18997115] Grimplet J,Martínez-Zapater JM,Carmona MJ Structural and functional annotation of the MADS-box transcription factor family in grapevine. BMC Genomics, 2016. 17: p. 80 [PMID:26818751]