PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.17G255100.1.p | ||||||||
Common Name | GLYMA_17G255100, LOC100807827 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | DBB | ||||||||
Protein Properties | Length: 328aa MW: 36454.1 Da PI: 6.6145 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 21.4 | 5.2e-07 | 53 | 92 | 5 | 38 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 C+ ++++e++ fC+ ++ lC+ C H+ H+ Glyma.17G255100.1.p 53 QCDVCNKHEASVFCTADEAALCDGCDHRVHHAnklaskHQ 92 7**************************9964446666666 PP | |||||||
2 | zf-B_box | 24.7 | 4.9e-08 | 103 | 142 | 2 | 39 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg..Htv 39 + + C+ ++e ++ fC++++ lC++C +++H+ Ht+ Glyma.17G255100.1.p 103 QHPLCDICQERRAFTFCQQDRAILCKECDVSIHSAneHTL 142 5689*****************************6688987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 3.1E-8 | 49 | 96 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.552 | 49 | 96 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 6.38E-6 | 52 | 96 | No hit | No description |
SMART | SM00336 | 1.1E-11 | 102 | 149 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.168 | 102 | 149 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.8E-6 | 103 | 143 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.13E-8 | 105 | 149 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009640 | Biological Process | photomorphogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000989 | Molecular Function | transcription factor activity, transcription factor binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 328 aa Download sequence Send to blast |
MDGSFIIVVL PPLPFDHIYP SQSLPTFYEH WPTPTLPLFS LSSFKLLTPM KIQCDVCNKH 60 EASVFCTADE AALCDGCDHR VHHANKLASK HQRFSLLRPS PKQHPLCDIC QERRAFTFCQ 120 QDRAILCKEC DVSIHSANEH TLKHDRFLLT GVKLSASAML RSSETTSDSN SNPSLLNFSH 180 QTTLLPPSST TTTTTSNNNN NKVAVEGTGS TSASSISEYL IETLPGWQVE DFLDSYSVPF 240 GFCKNDEVLP RFDGEMEGHL SSFSTENMGI WVPQAPPTLM CSSQMDRVIV HGETNIKGSS 300 RSRLKDDNFT VPQISPPSNS KRARFLW* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.34087 | 0.0 | cotyledon| root| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that acts as positive regulator of seedling photomorphogenesis (PubMed:17965270). Acts downstream of COP1 and play an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). {ECO:0000269|PubMed:17965270, ECO:0000269|PubMed:21070414}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.17G255100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT095281 | 0.0 | BT095281.1 Soybean clone JCVI-FLGm-7G11 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003550408.2 | 0.0 | B-box zinc finger protein 20 | ||||
Refseq | XP_028209034.1 | 0.0 | B-box zinc finger protein 20-like | ||||
Swissprot | Q9LQZ7 | 2e-81 | BBX21_ARATH; B-box zinc finger protein 21 | ||||
TrEMBL | A0A445GBZ3 | 0.0 | A0A445GBZ3_GLYSO; B-box zinc finger protein 21 | ||||
TrEMBL | K7MNZ7 | 0.0 | K7MNZ7_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA17G37430.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1448 | 34 | 94 | Representative plant | OGRP2984 | 11 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75540.1 | 3e-79 | salt tolerance homolog2 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.17G255100.1.p |
Entrez Gene | 100807827 |