PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.17G255100.1.p
Common NameGLYMA_17G255100, LOC100807827
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family DBB
Protein Properties Length: 328aa    MW: 36454.1 Da    PI: 6.6145
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.17G255100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.45.2e-075392538
             zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                          C+ ++++e++ fC+ ++  lC+ C    H+       H+
  Glyma.17G255100.1.p 53 QCDVCNKHEASVFCTADEAALCDGCDHRVHHAnklaskHQ 92
                         7**************************9964446666666 PP
2zf-B_box24.74.9e-08103142239
             zf-B_box   2 eerkCpeHeekelqlfCedCqqllCedClleeHkg..Htv 39 
                          + + C+ ++e ++  fC++++  lC++C +++H+   Ht+
  Glyma.17G255100.1.p 103 QHPLCDICQERRAFTFCQQDRAILCKECDVSIHSAneHTL 142
                          5689*****************************6688987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003363.1E-84996IPR000315B-box-type zinc finger
PROSITE profilePS5011910.5524996IPR000315B-box-type zinc finger
CDDcd000216.38E-65296No hitNo description
SMARTSM003361.1E-11102149IPR000315B-box-type zinc finger
PROSITE profilePS5011910.168102149IPR000315B-box-type zinc finger
PfamPF006431.8E-6103143IPR000315B-box-type zinc finger
CDDcd000211.13E-8105149No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009640Biological Processphotomorphogenesis
GO:0005634Cellular Componentnucleus
GO:0000989Molecular Functiontranscription factor activity, transcription factor binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MDGSFIIVVL PPLPFDHIYP SQSLPTFYEH WPTPTLPLFS LSSFKLLTPM KIQCDVCNKH  60
EASVFCTADE AALCDGCDHR VHHANKLASK HQRFSLLRPS PKQHPLCDIC QERRAFTFCQ  120
QDRAILCKEC DVSIHSANEH TLKHDRFLLT GVKLSASAML RSSETTSDSN SNPSLLNFSH  180
QTTLLPPSST TTTTTSNNNN NKVAVEGTGS TSASSISEYL IETLPGWQVE DFLDSYSVPF  240
GFCKNDEVLP RFDGEMEGHL SSFSTENMGI WVPQAPPTLM CSSQMDRVIV HGETNIKGSS  300
RSRLKDDNFT VPQISPPSNS KRARFLW*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.340870.0cotyledon| root| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that acts as positive regulator of seedling photomorphogenesis (PubMed:17965270). Acts downstream of COP1 and play an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). {ECO:0000269|PubMed:17965270, ECO:0000269|PubMed:21070414}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.17G255100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0952810.0BT095281.1 Soybean clone JCVI-FLGm-7G11 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003550408.20.0B-box zinc finger protein 20
RefseqXP_028209034.10.0B-box zinc finger protein 20-like
SwissprotQ9LQZ72e-81BBX21_ARATH; B-box zinc finger protein 21
TrEMBLA0A445GBZ30.0A0A445GBZ3_GLYSO; B-box zinc finger protein 21
TrEMBLK7MNZ70.0K7MNZ7_SOYBN; Uncharacterized protein
STRINGGLYMA17G37430.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14483494
Representative plantOGRP29841130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75540.13e-79salt tolerance homolog2
Publications ? help Back to Top
  1. Xu D, et al.
    BBX21, an Arabidopsis B-box protein, directly activates HY5 and is targeted by COP1 for 26S proteasome-mediated degradation.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(27): p. 7655-60
    [PMID:27325768]
  2. Xu DB, et al.
    The G-Protein Ī² Subunit AGB1 Promotes Hypocotyl Elongation through Inhibiting Transcription Activation Function of BBX21 inĀ Arabidopsis.
    Mol Plant, 2017. 10(9): p. 1206-1223
    [PMID:28827171]
  3. Xu D,Jiang Y,Li J,Holm M,Deng XW
    The B-Box Domain Protein BBX21 Promotes Photomorphogenesis.
    Plant Physiol., 2018. 176(3): p. 2365-2375
    [PMID:29259103]
  4. Job N,Yadukrishnan P,Bursch K,Datta S,Johansson H
    Two B-Box Proteins Regulate Photomorphogenesis by Oppositely Modulating HY5 through their Diverse C-Terminal Domains.
    Plant Physiol., 2018. 176(4): p. 2963-2976
    [PMID:29439209]
  5. Crocco CD,Ocampo GG,Ploschuk EL,Mantese A,Botto JF
    Heterologous Expression of AtBBX21 Enhances the Rate of Photosynthesis and Alleviates Photoinhibition in Solanumtuberosum.
    Plant Physiol., 2018. 177(1): p. 369-380
    [PMID:29555784]
  6. Kang X, et al.
    HRB2 and BBX21 interaction modulates Arabidopsis ABI5 locus and stomatal aperture.
    Plant Cell Environ., 2018. 41(8): p. 1912-1925
    [PMID:29748960]