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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.17G254600.1.p | ||||||||
Common Name | GLYMA_17G254600, LOC100776824 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ERF | ||||||||
Protein Properties | Length: 288aa MW: 31707.8 Da PI: 6.2722 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.1 | 5.8e-20 | 39 | 88 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ykGVr++ +g+WvAeIr+p + r +r +lg+f+ta eAa a++aa++kl+g Glyma.17G254600.1.p 39 TYKGVRQRT-WGKWVAEIREP---N-RgARLWLGTFDTAREAALAYDAAARKLYG 88 69****999.**********8...3.35*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.12E-21 | 38 | 98 | No hit | No description |
SuperFamily | SSF54171 | 9.15E-22 | 39 | 96 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.576 | 39 | 96 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.2E-14 | 39 | 88 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.8E-31 | 39 | 97 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.3E-36 | 39 | 102 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.1E-10 | 40 | 51 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.1E-10 | 62 | 78 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 288 aa Download sequence Send to blast |
MLKSGMGIQE RKKVKKPAQA SSRKGCMRGK GGPENATCTY KGVRQRTWGK WVAEIREPNR 60 GARLWLGTFD TAREAALAYD AAARKLYGPD AKLNLPELSV PYAAGVMNPS HMQQQQQQQQ 120 QPQVPQMMMQ QQQPLVHPTF DLVNVTPHSD FNNNSINILN NNPVVSSMAS SFLADAAAPV 180 YTSCDSIVSL PLSATNYTTN NTVPMEMDGY YYSSIAVESK EDDMFRPFWG PTMDDTMPVS 240 DESIWTEAAM SLDYPIVGGG GGFGNNRKFF FGEATAWDSL QTPSFCM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 6e-18 | 40 | 96 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 9 | 16 | ERKKVKKP |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.55972 | 0.0 | seed coat |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.17G254600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003549447.3 | 0.0 | ethylene-responsive transcription factor ERF043 | ||||
Refseq | XP_028210195.1 | 0.0 | ethylene-responsive transcription factor ERF043-like | ||||
TrEMBL | A0A445GBS7 | 0.0 | A0A445GBS7_GLYSO; Dehydration-responsive element-binding protein 2D | ||||
TrEMBL | K7MNY9 | 0.0 | K7MNY9_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA17G37350.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2562 | 33 | 80 |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75490.1 | 1e-42 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.17G254600.1.p |
Entrez Gene | 100776824 |