PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.17G254000.1.p
Common NameGLYMA_17G254000, LOC100776290
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family TALE
Protein Properties Length: 612aa    MW: 67799.6 Da    PI: 6.3136
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.17G254000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.81e-094004371954
                          HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                          Fe   ++yp+ +e+  LA+++gLt++qV +WF N R +
  Glyma.17G254000.1.p 400 FEHflHPYPKDSEKIMLARQTGLTKNQVANWFINARVR 437
                          665559******************************88 PP
2BELL121.14.9e-39271342172
                 BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                          erq+   kk+kLls+l+eVdkrY+qy++q+q+v+ssF++v g+g+a+pYt+lAl++iSrhFrcL dai++qi
  Glyma.17G254000.1.p 271 ERQNFLDKKTKLLSMLDEVDKRYRQYCHQMQIVVSSFDMVSGCGAAEPYTALALRTISRHFRCLHDAISGQI 342
                          6788889****************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005744.4E-57192340IPR006563POX domain
PfamPF075265.2E-48199339IPR006563POX domain
PROSITE profilePS5007112.455378441IPR001356Homeobox domain
CDDcd000861.23E-12381442No hitNo description
SMARTSM003892.0E-9381445IPR001356Homeobox domain
SuperFamilySSF466892.82E-17382448IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.9E-28384447IPR009057Homeodomain-like
PfamPF059204.1E-17398437IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 612 aa     Download sequence    Send to blast
MYPNQAFSSG SYADMLSGNP LLPHNYGETV GGQNELKFIT SMRDTMIMQP IDGHPNAAAT  60
TGNPDSFENA GDSHSHVIPR TTQLGLVDNE QNVQNQGLSL SLGSVMPSIA SVPTFPYQYP  120
GTSFSSLMSA CVPNLKGTSS LKDDEASLQR ELRNAECMAS LASSGGFHKR DGLYNPQHPS  180
MCLGEGQSHG SQGFSNNMLN SQYLKAAQEL LDEIVNVRKQ TSLEKQPSFR DVGLDGSKDS  240
DGKSTTQSVQ ISSGPNGSSA ANSSCELSPT ERQNFLDKKT KLLSMLDEVD KRYRQYCHQM  300
QIVVSSFDMV SGCGAAEPYT ALALRTISRH FRCLHDAISG QIQVTQRNLG EQEGIPRLRY  360
VDQQLRQQKA LQQLGVMRQA WRPQRGLPET SVSILRAWLF EHFLHPYPKD SEKIMLARQT  420
GLTKNQVANW FINARVRLWK PMVEEMYKEE FDVQASDNKR EESQDNLITV DDSVQHHGLK  480
LDHADRGIQS SDHGENAMDP RIGKLQGDQR FNMNNNNSPY YGDGCIMAST PATYDLSELG  540
NIAVGGHVSL ALELRNCESE GFGVSNDDMH KRRKKTLASS PEADLLDYHF TDTGKQQNKF  600
GNPHLLHEFV V*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A2e-16387445563Homeobox protein Meis2
4xrm_B2e-16387445563Homeobox protein Meis2
4xrs_A1e-16387444158Homeobox protein Meis1
4xrs_B1e-16387444158Homeobox protein Meis1
5bng_A2e-16387445159Homeobox protein Meis2
5bng_B2e-16387445159Homeobox protein Meis2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.342300.0hypocotyl| stem| vegetative bud
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.17G254000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003549446.20.0BEL1-like homeodomain protein 7
RefseqXP_014625504.10.0BEL1-like homeodomain protein 7
RefseqXP_028210787.10.0BEL1-like homeodomain protein 7
RefseqXP_028210788.10.0BEL1-like homeodomain protein 7
TrEMBLA0A445GBV70.0A0A445GBV7_GLYSO; BEL1-like homeodomain protein 7
TrEMBLI1MXZ40.0I1MXZ4_SOYBN; Uncharacterized protein
STRINGGLYMA17G37260.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21463179
Representative plantOGRP13316172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16400.11e-102BEL1-like homeodomain 7