PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.17G245900.1.p
Common NameGLYMA_17G245900, LOC100804621
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family B3
Protein Properties Length: 563aa    MW: 63251.3 Da    PI: 8.5208
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.17G245900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.75e-191197799
                         .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                   B3  7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                          s++++s+rl lp  f+ +++g + +s  ++l+ +sg++W+v+l   k+ +  +l  GW+ Fv +++L+ g+ +vF+++g+  f  +v+vf+
  Glyma.17G245900.1.p 11 YSSAFSSHRLKLPDGFVCHMEGRTYGS--VSLTGPSGKTWTVQL--IKQENDLFLHHGWSTFVVDHQLECGELLVFRYEGHLHF--TVQVFD 96
                         4899*************8888887775..***************..999999**************************987666..999999 PP

                         S CS
                   B3 99 k 99
                         k
  Glyma.17G245900.1.p 97 K 97
                         7 PP
2B348.41.7e-15217308195
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                          f+ ++++ +v+ s  l +p +f  +h   ++++++++l +++g+ W+v+    ++   +++l +GW  Fv+ n++k+gD+++F+l+++ e
  Glyma.17G245900.1.p 217 FVRIMKSFNVSGSYTLNIPYQFSMAHL--PNCKIKIILHNLKGEHWTVNSVPtTRVHTSHTLCGGWMAFVRGNNIKVGDICIFELVHECE 304
                          556677778888899*******98996..46999***************954566666799***********************998655 PP

                          E..EEE CS
                   B3  90 felvvk 95 
                             +v+
  Glyma.17G245900.1.p 305 L--RVR 308
                          4..555 PP
3B350.43.9e-16442534196
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrse 89 
                          f+k++++ +v+ s  l +p +f ++h   ++ ++++tl++++g+ W+v+   + k+++ +++ +GW  Fv++n+++ gD+++F+l+ + e
  Glyma.17G245900.1.p 442 FVKIMKKFNVSGSYTLKIPYQFSAAHL--PTYKTEVTLRNSRGECWTVNSVPDAKGRTvHTFCGGWMAFVRDNDINFGDTCIFELVAQCE 529
                          89999999***************9994..334569***************77666666799***********************987433 PP

                          E..EEEE CS
                   B3  90 felvvkv 96 
                            ++v +
  Glyma.17G245900.1.p 530 --MHVYI 534
                          ..46655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.6E-213100IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.86598IPR003340B3 DNA binding domain
SMARTSM010192.3E-10798IPR003340B3 DNA binding domain
SuperFamilySSF1019368.63E-2111103IPR015300DNA-binding pseudobarrel domain
CDDcd100171.15E-161296No hitNo description
PfamPF023622.8E-161297IPR003340B3 DNA binding domain
SuperFamilySSF1019367.85E-22212310IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.3E-20212310IPR015300DNA-binding pseudobarrel domain
CDDcd100176.98E-19215309No hitNo description
PROSITE profilePS5086312.872217313IPR003340B3 DNA binding domain
PfamPF023623.2E-12217309IPR003340B3 DNA binding domain
SMARTSM010193.3E-10217313IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.7E-22434535IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.47E-23435536IPR015300DNA-binding pseudobarrel domain
CDDcd100171.49E-19440534No hitNo description
PfamPF023621.2E-13442532IPR003340B3 DNA binding domain
PROSITE profilePS5086312.943442538IPR003340B3 DNA binding domain
SMARTSM010196.8E-13442538IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 563 aa     Download sequence    Send to blast
MMRKPHFYEV YSSAFSSHRL KLPDGFVCHM EGRTYGSVSL TGPSGKTWTV QLIKQENDLF  60
LHHGWSTFVV DHQLECGELL VFRYEGHLHF TVQVFDKDAC EKEAAFHSEC SQSSKIMSTN  120
ENQELELGVG KELLRYEIVR PISMFRENEE TSKACSANDV PVPFHMDNSK EDEETAILYR  180
SGKDDHRYIL SGVSLSNVSA HDEKKVSQSF ISSFPYFVRI MKSFNVSGSY TLNIPYQFSM  240
AHLPNCKIKI ILHNLKGEHW TVNSVPTTRV HTSHTLCGGW MAFVRGNNIK VGDICIFELV  300
HECELRVRIA EVAKDGSDCQ VGNLAITRPS AGHAVTSRCM PMNPKVNSKC IRKVDLSDKK  360
WSKIGQETIL SIDLKKSSRA SNTSKKMGLC PQSKAAHKKL AAPRRHRVDD ELSSQAKAGL  420
RMLFALDEQR VAQAFTSPFP SFVKIMKKFN VSGSYTLKIP YQFSAAHLPT YKTEVTLRNS  480
RGECWTVNSV PDAKGRTVHT FCGGWMAFVR DNDINFGDTC IFELVAQCEM HVYISGVGKE  540
GLDHQNGHLK LTNRLANVPS TC*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.205430.0flower
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.17G245900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003549416.20.0B3 domain-containing protein Os01g0723500
RefseqXP_028211662.10.0B3 domain-containing protein Os01g0723500-like
TrEMBLA0A445GBL60.0A0A445GBL6_GLYSO; B3 domain-containing protein
TrEMBLK7MNS20.0K7MNS2_SOYBN; Uncharacterized protein
STRINGGLYMA17G36471.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF114703238
Representative plantOGRP7653917
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.15e-20B3 family protein