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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.17G241000.2.p | ||||||||
Common Name | GLYMA_17G241000, LOC102668194 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | bHLH | ||||||||
Protein Properties | Length: 297aa MW: 32402.1 Da PI: 6.9221 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 50.3 | 4.3e-16 | 128 | 174 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn E+rRR+riN+++ L+ l+P++ K +Ka++L +A+eY+k+Lq Glyma.17G241000.2.p 128 FHNLSEKRRRSRINEKMKALQNLIPNS-----NKTDKASMLDEAIEYLKQLQ 174 5*************************7.....5******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 2.5E-20 | 121 | 184 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.36E-20 | 121 | 184 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.765 | 124 | 173 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.05E-18 | 127 | 178 | No hit | No description |
Pfam | PF00010 | 1.6E-13 | 128 | 174 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.3E-18 | 130 | 179 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 297 aa Download sequence Send to blast |
MAGDVGRALP PPDSEEFSTL FSQLLHNSPP LGMDPNHSPP DFTPHNNTID ININNNIINN 60 NNNNNPVPSS PSNFNFSDPH HYIPASDATT FKQHTPDFTS FSVESVEASK PVPPPRSSSS 120 KRSRAAEFHN LSEKRRRSRI NEKMKALQNL IPNSNKTDKA SMLDEAIEYL KQLQLQVQML 180 MMRNGLSLHP MSLPGGLRPM IMSQTGLNLD GSNGFHNSTS AIASSSNDES LVRHAFSFPK 240 QCSISNQSIG VPSVTNIATS DTSSTFHPSI KDALYGNMPQ LFMDTTTMGK PSPDVS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.17G241000.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT147727 | 1e-113 | BT147727.1 Lotus japonicus clone JCVI-FLLj-8F4 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006601285.1 | 0.0 | transcription factor ALC isoform X2 | ||||
TrEMBL | A0A0R0FQU7 | 0.0 | A0A0R0FQU7_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA17G35951.1 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36930.1 | 3e-28 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.17G241000.2.p |
Entrez Gene | 102668194 |