PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.17G241000.1.p
Common NameGLYMA_17G241000, LOC102668194
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 298aa    MW: 32530.3 Da    PI: 7.1369
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.17G241000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.34.3e-16129175455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           hn  E+rRR+riN+++  L+ l+P++      K +Ka++L +A+eY+k+Lq
  Glyma.17G241000.1.p 129 FHNLSEKRRRSRINEKMKALQNLIPNS-----NKTDKASMLDEAIEYLKQLQ 175
                          5*************************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.36E-20122185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-20122185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.765125174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.07E-18128179No hitNo description
PfamPF000101.6E-13129175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.3E-18131180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MAGDVGRALP PPDSEEFSTL FSQLLHNSPP LGMDPNHSPP DFTPHNNTID ININNNIINN  60
NNNNNPVPSS PSNFNFSDPH HYIPASDATT FKQHTPDFTS FSVEKSVEAS KPVPPPRSSS  120
SKRSRAAEFH NLSEKRRRSR INEKMKALQN LIPNSNKTDK ASMLDEAIEY LKQLQLQVQM  180
LMMRNGLSLH PMSLPGGLRP MIMSQTGLNL DGSNGFHNST SAIASSSNDE SLVRHAFSFP  240
KQCSISNQSI GVPSVTNIAT SDTSSTFHPS IKDALYGNMP QLFMDTTTMG KPSPDVS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.17G241000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1477271e-113BT147727.1 Lotus japonicus clone JCVI-FLLj-8F4 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006601284.10.0transcription factor ALC isoform X1
TrEMBLK7MNP20.0K7MNP2_SOYBN; Uncharacterized protein
STRINGGLYMA17G35951.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22763379
Representative plantOGRP25816128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.13e-28bHLH family protein