PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.17G236300.1.p
Common NameLOC100781993
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family LBD
Protein Properties Length: 169aa    MW: 18820.6 Da    PI: 7.775
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.17G236300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26092.45.3e-292102196
               DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 
                          +C++C+vlr++C++ C+l+ ++     p++q++++ +++k+FG+s ++++++++pe++r+++++sl++e++ r+ +Pv+Gavg+++++++
  Glyma.17G236300.1.p   2 SCNGCRVLRKGCSDTCPLRSCLqwiesPESQRHATLFLAKFFGRSDLMSFISSVPETKRPALFQSLLFEGCGRMVNPVNGAVGLLSSGKW 91 
                          6***************************************************************************************** PP

               DUF260  86 qleqlkaelal 96 
                          +++q+++e++l
  Glyma.17G236300.1.p  92 HVCQAAVETVL 102
                          *****999865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089117.6631107IPR004883Lateral organ boundaries, LOB
PfamPF031952.9E-242100IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSDTCPLR SCLQWIESPE SQRHATLFLA KFFGRSDLMS FISSVPETKR  60
PALFQSLLFE GCGRMVNPVN GAVGLLSSGK WHVCQAAVET VLDGGVLRPS SETFTGDSDD  120
TRYHLRTLTL MHDVREMNEN SSLMNRPQEL EMASYGNHKK NQILNLFM*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.556440.0seed coat
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.17G236300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006601268.11e-124LOB domain-containing protein 39
SwissprotQ9SZE82e-60LBD39_ARATH; LOB domain-containing protein 39
TrEMBLA0A368UGU21e-122A0A368UGU2_SOYBN; Uncharacterized protein
STRINGGLYMA17G35440.11e-123(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72134136
Representative plantOGRP4031699
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37540.17e-63LOB domain-containing protein 39