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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Glyma.17G236200.1.p |
| Common Name | GLYMA_17G236200 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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| Family |
C2H2 |
| Protein Properties |
Length: 241aa MW: 25797.8 Da PI: 8.3958 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Glyma.17G236200.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 15 | 7e-05 | 85 | 107 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
ykC+ C+ksF++ L H +H
Glyma.17G236200.1.p 85 YKCSVCDKSFPSYQALGGHKASH 107
9***********99999998887 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
| GO:0046872 | Molecular Function | metal ion binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 241 aa
Download sequence Send
to blast |
MALEALNSPT TTAPSFPFDD PTIPWAKRKR SKRSRDHPSE EEYLALCLIM LARGGTTTVN 60
NRHVSPPPPQ PQPQPTPDPS TKLSYKCSVC DKSFPSYQAL GGHKASHRKL AGAAEDQPPS 120
TTTSSAAATS SASGGKAHEC SICHKSFPTG QALGGHKRCH YEGNGNGNNN NSNSVVTVAS 180
EGVGSTHTVS HGHHRDFDLN IPAFPDFSTK VGEDEVESPH PVMKKPRLFV IPKIEIPQFQ 240
*
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| Expression -- UniGene
? help Back to Top |
| UniGene ID |
E-value |
Expressed in |
| Gma.31854 | 0.0 | epicotyl| flower| hypocotyl| leaf| root| seed coat |
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems and leaves. {ECO:0000269|PubMed:10806347, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:8662738, ECO:0000269|PubMed:9132053}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional repressor involved in abiotic stress responses. Can repress the stress responsive genes DREB1A and LTI78. Probably involved in jasmonate (JA) early signaling response. May regulate the expression of the JA biosynthesis gene LOX3 and control the expression of TIFY10A/JAZ1, a key repressor in the JA signaling cascade. {ECO:0000269|PubMed:12032082, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:17112521, ECO:0000269|PubMed:18216250, ECO:0000269|PubMed:20140232, ECO:0000269|PubMed:8662738}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By salt, cold and drought stresses. Down-regulated by gibberellin. {ECO:0000269|PubMed:10806347, ECO:0000269|PubMed:11351099, ECO:0000269|PubMed:12837949, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:17112521, ECO:0000269|PubMed:8662738}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | GMU68763 | 0.0 | U68763.1 Glycine max putative transcription factor SCOF-1 (scof-1) mRNA, complete cds. |
| Publications
? help Back to Top |
- Li C,Chang PP,Ghebremariam KM,Qin L,Liang Y
Overexpression of tomato SpMPK3 gene in Arabidopsis enhances the osmotic tolerance.
Biochem. Biophys. Res. Commun., 2014. 443(2): p. 357-62
[PMID:24275141] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Shi H,Chan Z
The cysteine2/histidine2-type transcription factor ZINC FINGER OF ARABIDOPSIS THALIANA 6-activated C-REPEAT-BINDING FACTOR pathway is essential for melatonin-mediated freezing stress resistance in Arabidopsis.
J. Pineal Res., 2014. 57(2): p. 185-91
[PMID:24962049] - Munekage YN,Inoue S,Yoneda Y,Yokota A
Distinct palisade tissue development processes promoted by leaf autonomous signalling and long-distance signalling in Arabidopsis thaliana.
Plant Cell Environ., 2015. 38(6): p. 1116-26
[PMID:25293694] - van Buer J,Cvetkovic J,Baier M
Cold regulation of plastid ascorbate peroxidases serves as a priming hub controlling ROS signaling in Arabidopsis thaliana.
BMC Plant Biol., 2016. 16(1): p. 163
[PMID:27439459] - Corrales AR, et al.
Multifaceted role of cycling DOF factor 3 (CDF3) in the regulation of flowering time and abiotic stress responses in Arabidopsis.
Plant Cell Environ., 2017. 40(5): p. 748-764
[PMID:28044345] - Nguyen HM, et al.
Ethanol Enhances High-Salinity Stress Tolerance by Detoxifying Reactive Oxygen Species in Arabidopsis thaliana and Rice.
Front Plant Sci, 2017. 8: p. 1001
[PMID:28717360] - Geilen K,Heilmann M,Hillmer S,Böhmer M
WRKY43 regulates polyunsaturated fatty acid content and seed germination under unfavourable growth conditions.
Sci Rep, 2017. 7(1): p. 14235
[PMID:29079824] - Liu X, et al.
Histone Deacetylase AtSRT1 Links Metabolic Flux and Stress Response in Arabidopsis.
Mol Plant, 2017. 10(12): p. 1510-1522
[PMID:29107034] - Huang K, et al.
Arabidopsis calcium-dependent protein kinase AtCPK1 plays a positive role in salt/drought-stress response.
Biochem. Biophys. Res. Commun., 2018. 498(1): p. 92-98
[PMID:29196259]
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