PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.17G236100.1.p
Common NameGLYMA_17G236100
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 354aa    MW: 39405.5 Da    PI: 4.669
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.17G236100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.51.5e-102803201055
                          HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          r+RR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  Glyma.17G236100.1.p 280 RKRRERINERLRILQNLVPNG-----TKVDISTMLEEAVNYVKFLQ 320
                          9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.49E-14270334IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.288270319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.5E-12275329IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-11276325IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.03E-12279324No hitNo description
PfamPF000108.6E-8280320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MEPVGAFPDG EWDCFRRIFA SDEEHEHDLF TPQFPLLFDG DDGLNIVTQH TFCAAPEAGE  60
NACMFYSLDA DHNSNSSQYI SQESSYSNTS SNCSGDDTVF IANPGNANYY FSYPDHVLAN  120
NNACVYSMDE KFFASFVPSI SDIVTEESAK LYKDVGSDKL ENSQCNQMEP IVFPTKQLQL  180
KRKLDVPAED KINKGSENQK KKARVSKDGQ GCMKNTWSKK NQKHTSNGEE AEETNTGLDG  240
QSCSSNMSED DNTSKSALNS NGKTRASRGS ATDPQSLYAR KRRERINERL RILQNLVPNG  300
TKVDISTMLE EAVNYVKFLQ LQIKLLSSDD LWMYAPFAHN GLDIGLNLNS LPL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.17G236100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028208953.10.0transcription factor bHLH85-like
TrEMBLA0A445GAZ90.0A0A445GAZ9_GLYSO; Transcription factor bHLH84
TrEMBLK7MNL70.0K7MNL7_SOYBN; Uncharacterized protein
STRINGGLYMA17G35423.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80733121
Representative plantOGRP10481454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27740.11e-44root hair defective 6-like 4