PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.17G231900.1.p
Common NameGLYMA_17G231900, LOC100789985
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 310aa    MW: 34394.3 Da    PI: 7.2494
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.17G231900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.21.4e-161462148
                         TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                         rg+W++eEd  l+++v+ +G+g +W + +++ g++R++k+c++rw++yl
  Glyma.17G231900.1.p 14 RGPWSPEEDATLKNYVETHGTGgNWIALPKKAGLRRCGKSCRLRWLNYL 62
                         89*********************************************97 PP
2Myb_DNA-binding47.44.4e-1569111246
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          g +T+eEd ++  + +q+G++ W++Ia++++ gRt++++k++w++
  Glyma.17G231900.1.p  69 GGFTEEEDNIICTLYAQMGSR-WSAIASKLP-GRTDNDVKNYWNT 111
                          569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.225962IPR017930Myb domain
SuperFamilySSF466893.91E-2811109IPR009057Homeodomain-like
SMARTSM007174.6E-121364IPR001005SANT/Myb domain
PfamPF002491.3E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-251569IPR009057Homeodomain-like
CDDcd001673.03E-91662No hitNo description
PROSITE profilePS5129423.20963117IPR017930Myb domain
SMARTSM007171.2E-1467115IPR001005SANT/Myb domain
PfamPF002492.4E-1369111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.1E-2570117IPR009057Homeodomain-like
CDDcd001671.04E-1171113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MGRAPCCDKA NVKRGPWSPE EDATLKNYVE THGTGGNWIA LPKKAGLRRC GKSCRLRWLN  60
YLRPDIKHGG FTEEEDNIIC TLYAQMGSRW SAIASKLPGR TDNDVKNYWN TKLKKKIMAR  120
KVTLKTLTHN DTLPSTSTPS SLTNNQNVKT SQNSPFPSQN QNSPPSVLPV LDANNALFIT  180
NNEKSIISFD QTHHGLYSPQ VMDDVVSQIG ASSRIINNNN NNNPMLSLSQ EGSSSISDSS  240
SIAMNNNNVS HPEQQHASDE SMEMLMDFGF GFPFDFANGP NCHYERVGEF ATSSYPEWVD  300
FSYADIKPH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-25141177108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.17G231900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150362e-56AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003550294.10.0transcription factor RAX2
RefseqXP_028210151.10.0transcription factor RAX2-like
TrEMBLA0A445GAQ10.0A0A445GAQ1_GLYSO; Transcription factor RAX3
TrEMBLK7MNI70.0K7MNI7_SOYBN; Uncharacterized protein
STRINGGLYMA17G35020.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65790.18e-74myb domain protein 68