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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.17G219700.1.p | ||||||||
Common Name | GLYMA_17G219700, LOC102665533 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ERF | ||||||||
Protein Properties | Length: 257aa MW: 29354.3 Da PI: 4.3724 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 51.4 | 2.7e-16 | 31 | 79 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +kGVr +k +g+Wv+eIr p++ r r++lg+++t +Aa+a +aa +l+g Glyma.17G219700.1.p 31 FKGVRKRK-WGKWVSEIRLPNS---RERIWLGSYDTQVKAARAFDAALYCLRG 79 8****999.**********933...5**********99*************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 8.6E-28 | 30 | 88 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.2E-29 | 30 | 93 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.969 | 30 | 87 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.23E-19 | 30 | 88 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 6.0E-8 | 31 | 42 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.68E-27 | 31 | 89 | No hit | No description |
Pfam | PF00847 | 3.7E-9 | 31 | 79 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.0E-8 | 53 | 69 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MVKSAMASVD SSSCNNDSFS SNNNIDSCKM FKGVRKRKWG KWVSEIRLPN SRERIWLGSY 60 DTQVKAARAF DAALYCLRGQ SATFNFPDTP RHLETNMVLS RDKQPQPLSH QEIQEVAVKF 120 ANNDDHPLEE EECAFQKQEQ ERSLEESQSD ESKSGNTIME MSNFPSIYDG ETHNNNVQVD 180 QLKGDWDTMD WTFLNMLDDL NGSDFGLYVG LDKMHPSEFL CPMTQAPLLY HGDDEIEGDD 240 DHDAFSNHSL LWSWNF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-15 | 31 | 87 | 15 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 31 | 37 | KGVRKRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.17G219700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006601199.1 | 0.0 | ethylene-responsive transcription factor ERF017 | ||||
Refseq | XP_028208804.1 | 0.0 | ethylene-responsive transcription factor ERF017-like | ||||
TrEMBL | A0A445GA87 | 0.0 | A0A445GA87_GLYSO; Ethylene-responsive transcription factor ERF017 | ||||
TrEMBL | K7MNA5 | 0.0 | K7MNA5_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA17G33535.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1479 | 33 | 99 |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19210.1 | 3e-38 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.17G219700.1.p |
Entrez Gene | 102665533 |