PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.17G215500.2.p | ||||||||
Common Name | Glyma17g32980.1, LOC100784317 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | TALE | ||||||||
Protein Properties | Length: 406aa MW: 45525 Da PI: 6.4653 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 23.5 | 9.3e-08 | 354 | 387 | 21 | 54 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp++e++++L +++gL+ +q+ +WF N+R + Glyma.17G215500.2.p 354 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 387 469*****************************87 PP | |||||||
2 | ELK | 28.9 | 2.6e-10 | 308 | 329 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELKh+L+++Y+++++++++E++ Glyma.17G215500.2.p 308 ELKHELKQGYKEKIVDIREEIL 329 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 1.6E-18 | 142 | 186 | IPR005540 | KNOX1 |
Pfam | PF03790 | 6.7E-17 | 144 | 185 | IPR005540 | KNOX1 |
SMART | SM01256 | 5.9E-27 | 196 | 251 | IPR005541 | KNOX2 |
Pfam | PF03791 | 4.6E-20 | 201 | 250 | IPR005541 | KNOX2 |
PROSITE profile | PS51213 | 9.969 | 308 | 328 | IPR005539 | ELK domain |
SMART | SM01188 | 6.1E-4 | 308 | 329 | IPR005539 | ELK domain |
Pfam | PF03789 | 9.3E-7 | 308 | 329 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 11.726 | 328 | 391 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.11E-16 | 330 | 394 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 4.7E-11 | 330 | 395 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.99E-12 | 331 | 392 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.1E-25 | 335 | 392 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 1.1E-17 | 348 | 387 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 406 aa Download sequence Send to blast |
MAYHNHHNLS QQDLPPLHHF PNQSMLPDQQ LLPSSPEPNS KPPSDPHPLQ TAPNWLNDAL 60 LRTHYTDTTN TATVATNSNV NVKVNGSNFL KLNPGASDAQ WLARPALHRH PGEVIDDGAG 120 ESMVEHADLK DGGGDAVSWQ IGRCKTEILQ HPLYEQLLSA HVACLRIATP VDQLPRIDAQ 180 LAQSQNVVAK YAVFGHNNIV ADDKELDQFM SHYVLLLCSF KEQLQQHVRV HAMEAVMACW 240 ELEQSLQSLT GVSPGEGTGA TMSDDENDQV DSDANLFDCS FDGADSMGFG PLVPTESERS 300 LMERVRQELK HELKQGYKEK IVDIREEILR KRRAGKLPGD TTSVLKAWWQ SHSKWPYPTE 360 EDKARLVQET GLQLKQINNW FINQRKRNWH SNPSTSTALK SKRKR* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 384 | 404 | RKRNWHSNPSTSTALKSKRKR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.60314 | 0.0 | cotyledon| leaf| meristem| root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Maximally expressed in sepals, petals and fully expanded leaves. Also expressed in other flower organs and in developing leaves. Low level expression in stem internodes. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.17G215500.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT031174 | 0.0 | KT031174.1 Glycine max clone HN_CCL_151 homeodomain/HOMEOBOX transcription factor (Glyma17g32980.1) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003550200.1 | 0.0 | homeobox protein knotted-1-like 3 isoform X3 | ||||
Refseq | XP_006601171.1 | 0.0 | homeobox protein knotted-1-like 3 isoform X1 | ||||
Swissprot | O04136 | 0.0 | KNAP3_MALDO; Homeobox protein knotted-1-like 3 | ||||
TrEMBL | A0A0K2CT26 | 0.0 | A0A0K2CT26_SOYBN; Homeodomain/HOMEOBOX transcription factor (Fragment) | ||||
TrEMBL | I1MWX1 | 0.0 | I1MWX1_SOYBN; Uncharacterized protein | ||||
TrEMBL | I1MWX2 | 0.0 | I1MWX2_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA17G32980.1 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25220.2 | 1e-179 | KNOTTED1-like homeobox gene 3 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.17G215500.2.p |
Entrez Gene | 100784317 |
Publications ? help Back to Top | |||
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