PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.17G215500.1.p
Common NameGlyma17g32980.1, LOC100784317
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family TALE
Protein Properties Length: 412aa    MW: 46083.5 Da    PI: 6.378
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.17G215500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.59.5e-083543872154
                          HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                          k +yp++e++++L +++gL+ +q+ +WF N+R +
  Glyma.17G215500.1.p 354 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 387
                          469*****************************87 PP
2ELK28.92.7e-10308329122
                  ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                          ELKh+L+++Y+++++++++E++
  Glyma.17G215500.1.p 308 ELKHELKQGYKEKIVDIREEIL 329
                          9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.6E-18142186IPR005540KNOX1
PfamPF037906.8E-17144185IPR005540KNOX1
SMARTSM012565.9E-27196251IPR005541KNOX2
PfamPF037914.7E-20201250IPR005541KNOX2
PfamPF037899.5E-7308329IPR005539ELK domain
PROSITE profilePS512139.969308328IPR005539ELK domain
SMARTSM011886.1E-4308329IPR005539ELK domain
PROSITE profilePS5007111.726328391IPR001356Homeobox domain
SuperFamilySSF466894.23E-16330394IPR009057Homeodomain-like
SMARTSM003894.7E-11330395IPR001356Homeobox domain
CDDcd000864.09E-12331392No hitNo description
Gene3DG3DSA:1.10.10.604.2E-25335392IPR009057Homeodomain-like
PfamPF059201.1E-17348387IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MAYHNHHNLS QQDLPPLHHF PNQSMLPDQQ LLPSSPEPNS KPPSDPHPLQ TAPNWLNDAL  60
LRTHYTDTTN TATVATNSNV NVKVNGSNFL KLNPGASDAQ WLARPALHRH PGEVIDDGAG  120
ESMVEHADLK DGGGDAVSWQ IGRCKTEILQ HPLYEQLLSA HVACLRIATP VDQLPRIDAQ  180
LAQSQNVVAK YAVFGHNNIV ADDKELDQFM SHYVLLLCSF KEQLQQHVRV HAMEAVMACW  240
ELEQSLQSLT GVSPGEGTGA TMSDDENDQV DSDANLFDCS FDGADSMGFG PLVPTESERS  300
LMERVRQELK HELKQGYKEK IVDIREEILR KRRAGKLPGD TTSVLKAWWQ SHSKWPYPTE  360
EDKARLVQET GLQLKQINNW FINQRKRNWH SNPSTSTALK SKRKRSNAGD N*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1384404RKRNWHSNPSTSTALKSKRKR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.603140.0cotyledon| leaf| meristem| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Maximally expressed in sepals, petals and fully expanded leaves. Also expressed in other flower organs and in developing leaves. Low level expression in stem internodes.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.17G215500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311740.0KT031174.1 Glycine max clone HN_CCL_151 homeodomain/HOMEOBOX transcription factor (Glyma17g32980.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006601171.10.0homeobox protein knotted-1-like 3 isoform X1
SwissprotO041360.0KNAP3_MALDO; Homeobox protein knotted-1-like 3
TrEMBLA0A0K2CT260.0A0A0K2CT26_SOYBN; Homeodomain/HOMEOBOX transcription factor (Fragment)
TrEMBLI1MWX10.0I1MWX1_SOYBN; Uncharacterized protein
STRINGGLYMA17G32980.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101734108
Representative plantOGRP16717148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.10.0KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Chai C, et al.
    Soybean transcription factor ORFeome associated with drought resistance: a valuable resource to accelerate research on abiotic stress resistance.
    BMC Genomics, 2015. 16: p. 596
    [PMID:26268547]