PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.17G213900.1.p
Common NameGLYMA_17G213900
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 356aa    MW: 40228.8 Da    PI: 5.4091
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.17G213900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.74.6e-07123166447
                          S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          WT eE++ ++ + +    + Wk I+ +    +t+ q+ s+ qky
  Glyma.17G213900.1.p 123 WTIEEHKSFLFGLEIKKEKGWKQISDKYVPSKTASQVASHAQKY 166
                          *************************99988*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.229115171IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.2E-5117170IPR009057Homeodomain-like
SuperFamilySSF466891.3E-11117170IPR009057Homeodomain-like
TIGRFAMsTIGR015572.5E-9118169IPR006447Myb domain, plants
CDDcd001677.19E-4123167No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MSDHYFDEEE ILELLKENDW PVFDDLFNNF ATQDSSPPAD EIIPGNDDSS PPADDEILAA  60
HEVLDTPAPL PVPPPAPAPN RVHTSATALD PAPQMVLASQ DPSHVILSGD SSHSVHHKKY  120
EHWTIEEHKS FLFGLEIKKE KGWKQISDKY VPSKTASQVA SHAQKYIKRK NTPMNERKRR  180
SIHDTILEDI DIIRIDQHNW VPPTSNFIVQ PHTLGSNWVP STSNLMVQSH TPVTDQHNWI  240
PPCPPNFAVP PRIPHVDQDT WVPPPPNFAV QPPTPHIDQH NWVPSPPNLA PHTSLIDQDN  300
WVPTPPDFAV QPHEMQRAQH KQMQQLNLHS SSPQMDEYRN FNCGHPQNEL DLIAQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.17G213900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006601664.10.0myb-like protein J
TrEMBLA0A0R0FGI10.0A0A0R0FGI1_SOYBN; Uncharacterized protein
STRINGGLYMA08G45255.11e-143(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2672723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.11e-14MYB_related family protein