PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.17G201800.1.p
Common NameGLYMA_17G201800
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family FAR1
Protein Properties Length: 620aa    MW: 71841.2 Da    PI: 6.3305
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.17G201800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR126.71.8e-0859134175
                 FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgk 75 
                          +fY+ YAk  GF vrks+  ++ +  e+ ++tfvCs+ g+r+ ++++   ++e+++  +   +C   + +  ++dg+
  Glyma.17G201800.1.p  59 QFYCWYAKISGFLVRKSHIVRN-TCMETLQQTFVCSCAGYRRVSTSDrrMRREKKKAGVVMKQCFVFMCIFVRDDGH 134
                          6*****************9999.66679*************998888444555556666778899888887777665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.1E-659133IPR004330FAR1 DNA binding domain
PfamPF105512.0E-24243325IPR018289MULE transposase domain
PROSITE profilePS509669.94420467IPR007527Zinc finger, SWIM-type
SMARTSM005750.0041442469IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 620 aa     Download sequence    Send to blast
MSELESSDNF CSFVNGDGLL KEECISIDSM VDIRQFDMEE ITDEVVRRLD FGDLELAYQF  60
YCWYAKISGF LVRKSHIVRN TCMETLQQTF VCSCAGYRRV STSDRRMRRE KKKAGVVMKQ  120
CFVFMCIFVR DDGHRKMSAY DIMQVENYRK VGIRPPHMYA TFANQCGGYD KVEFIRKDIN  180
NEEGRMRKQH TSDASGALKY LHDLRKKDPM MYVSYTADEG SRLQRLFWCD TESQLLYEVF  240
GDVLAFDATY KKNKYLFPFV VFFGMNHHNQ TIVFATTIVT DETEETYVWL LEQLLVAMKG  300
KAPCSIITDG DLTMMNAITR VMPVVEFEEK WKEMVATFEL EDNTWIAELY EKRMKWSPAH  360
LRDYSSTYGN EVLQTNLRSL EQSDDHLLTK EMFKLFQSYL CRNIKLRVVD CKEMATFSIY  420
TVVKYYSGSV WLVSYCPSTV DFSCSCMRMQ SIGLPCDHIL VVLVSLNFME LPSSLVLNRW  480
SKVATENIKD KYPNSAMYWD SQLMARYATL VEVSRQVCEA AYYDEDEYDK MLCFLSNEVK  540
RLKSKKNSEP CIDDNDEQAD QQGHNYDGIL DPVVVRTKGC GQVGVNESGK QRRIQKCGQC  600
GGSGHNKRST IHNEKTSFI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.17G201800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2351390.0AC235139.1 Glycine max strain Williams 82 clone GM_WBa0065P04, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028196602.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A0R0FP050.0A0A0R0FP05_SOYBN; Uncharacterized protein
STRINGGLYMA11G29330.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3265734
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06250.16e-47FAR1-related sequence 7