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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.17G197500.2.p | ||||||||
Common Name | GLYMA_17G1975001, LOC100791219 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | WRKY | ||||||||
Protein Properties | Length: 317aa MW: 34570.3 Da PI: 10.2951 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 98.3 | 4.8e-31 | 239 | 296 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+y+WrKYGqK++kgs++pr+YY+C++ gCp++k+ver+ +dp ++++tYegeH+h Glyma.17G197500.2.p 239 DEYSWRKYGQKPIKGSPYPRGYYKCSTIrGCPARKHVERAPDDPAMLIVTYEGEHRHA 296 9************************9877****************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 3.7E-16 | 191 | 235 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 1.3E-32 | 225 | 296 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.894 | 232 | 298 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.22E-26 | 235 | 297 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.6E-36 | 237 | 297 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.5E-26 | 239 | 295 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 317 aa Download sequence Send to blast |
MAVELMGFPK LDEQKAIQEA ASEGLKGMKH LIRTLSNQPS HLNTELTDVT VSKFKKLISL 60 LNRTGHARFR RAPVQYSSPH APVHNTNAST SSIQLPPPPQ NPNIPALAQF PTPAPVAVHH 120 TPVTLDFTKP HNALLSSNAK SVELEFSKET FSVSSNSSFM SSAITGDGSV SNGKIFLAPP 180 ATSAGKRPAF KKRCHEHREH SDDVSGNSKC HCVKRRKNRV KSTVRVPAIS SKVADIPPDE 240 YSWRKYGQKP IKGSPYPRGY YKCSTIRGCP ARKHVERAPD DPAMLIVTYE GEHRHAVQAA 300 MQENAAGVVG LVFEST* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 3e-21 | 225 | 297 | 2 | 73 | WRKY transcription factor 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.36482 | 0.0 | hypocotyl| somatic embryo |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: In young, mature and senescent leaves. {ECO:0000269|PubMed:11722756}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Regulates rhizobacterium B.cereus AR156-induced systemic resistance (ISR) to P.syringae pv. tomato DC3000, probably by activating the jasmonic acid (JA)- signaling pathway (PubMed:26433201). {ECO:0000250, ECO:0000269|PubMed:26433201}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.17G197500.2.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Strongly during leaf senescence (PubMed:11722756). Repressed by rhizobacterium B.cereus AR156 in leaves, and to a lower extent, by P.fluorescens WCS417r (PubMed:26433201). {ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:26433201}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU019571 | 0.0 | EU019571.1 Glycine max WRKY31 (WRKY31) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003550132.1 | 0.0 | probable WRKY transcription factor 11 | ||||
Refseq | XP_028211263.1 | 0.0 | probable WRKY transcription factor 11 | ||||
Swissprot | Q9SV15 | 1e-131 | WRK11_ARATH; Probable WRKY transcription factor 11 | ||||
TrEMBL | A0A0R0FFN4 | 0.0 | A0A0R0FFN4_SOYBN; Uncharacterized protein | ||||
TrEMBL | A0A445G915 | 0.0 | A0A445G915_GLYSO; Putative WRKY transcription factor 11 isoform A | ||||
STRING | GLYMA17G29190.1 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31550.1 | 1e-118 | WRKY DNA-binding protein 11 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.17G197500.2.p |
Entrez Gene | 100791219 |