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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.17G197500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | WRKY | ||||||||
Protein Properties | Length: 330aa MW: 36736 Da PI: 9.8085 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 98.2 | 5.1e-31 | 252 | 309 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+y+WrKYGqK++kgs++pr+YY+C++ gCp++k+ver+ +dp ++++tYegeH+h Glyma.17G197500.1.p 252 DEYSWRKYGQKPIKGSPYPRGYYKCSTIrGCPARKHVERAPDDPAMLIVTYEGEHRHA 309 9************************9877****************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 1.0E-13 | 204 | 248 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 1.4E-32 | 238 | 309 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.894 | 245 | 311 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.48E-26 | 248 | 310 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.6E-36 | 250 | 310 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.6E-26 | 252 | 308 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 330 aa Download sequence Send to blast |
MDVVERVCRQ RVILKLMNFQ KQDEQKAIEE ATMEGLKGMD NLIQILSHHP SYINTELANI 60 IVSKFKKLNA LLNRTGHARF RRTPIHSTAP VHSTNPVHNA STSSTQVPLS ENPNLFALVQ 120 SPVPVQVHRM PASVALDFME PHNPLISFNA KSVELEFSKE TFNVPSKSSF ISPAITNNGN 180 VSNKEIFLAS APPTTSVEKV LAFKKQCYEH HEQSVDISGS SKCHYLKQRK NRVKSTVRVP 240 AISSKVADIP PDEYSWRKYG QKPIKGSPYP RGYYKCSTIR GCPARKHVER APDDPAMLIV 300 TYEGEHRHAV QAAMQENAAG VVGLVFEST* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 5e-21 | 248 | 312 | 15 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 5e-21 | 248 | 312 | 15 | 78 | Probable WRKY transcription factor 4 |
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Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.36482 | 1e-176 | hypocotyl| somatic embryo |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: In young, mature and senescent leaves. {ECO:0000269|PubMed:11722756}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Regulates rhizobacterium B.cereus AR156-induced systemic resistance (ISR) to P.syringae pv. tomato DC3000, probably by activating the jasmonic acid (JA)- signaling pathway (PubMed:26433201). {ECO:0000250, ECO:0000269|PubMed:26433201}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.17G197500.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Strongly during leaf senescence (PubMed:11722756). Repressed by rhizobacterium B.cereus AR156 in leaves, and to a lower extent, by P.fluorescens WCS417r (PubMed:26433201). {ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:26433201}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU019571 | 1e-144 | EU019571.1 Glycine max WRKY31 (WRKY31) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014628812.2 | 1e-157 | probable WRKY transcription factor 11, partial | ||||
Swissprot | Q9SV15 | 1e-108 | WRK11_ARATH; Probable WRKY transcription factor 11 | ||||
TrEMBL | A0A368UGS1 | 0.0 | A0A368UGS1_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA17G29190.1 | 1e-150 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1314 | 34 | 98 | Representative plant | OGRP3557 | 11 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31550.1 | 1e-110 | WRKY DNA-binding protein 11 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.17G197500.1.p |