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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Glyma.17G185000.1.p |
| Common Name | GLYMA_17G185000, LOC100815663 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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| Family |
NAC |
| Protein Properties |
Length: 218aa MW: 24741.4 Da PI: 9.4972 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Glyma.17G185000.1.p | genome | JGI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 108.7 | 7.1e-34 | 15 | 132 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90
lp GfrF Ptdeel+ +yLkkk+ +++l++ +vi+e+d++++ePw+Lp ++ +++ yfFs+r++ + +r + sg Wk+ gk+k
Glyma.17G185000.1.p 15 LPIGFRFCPTDEELLLHYLKKKAFAQQLPA-SVISEFDVFQTEPWKLPGEL---RENRYFFSNRSNG-----NIKRPAGSGCWKSVGKEK 95
699***************************.99***************544...4578****99774.....5678889*********** PP
NAM 91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
+++++ +++++g+k+tL f kg++++ +t+Wvmhe rl
Glyma.17G185000.1.p 96 QIIHSeSNQVIGMKETLFFCKGSHET--RTQWVMHELRL 132
*999857778**********888877..9*******987 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 218 aa
Download sequence Send
to blast |
MGRFENHVVK GGIKLPIGFR FCPTDEELLL HYLKKKAFAQ QLPASVISEF DVFQTEPWKL 60
PGELRENRYF FSNRSNGNIK RPAGSGCWKS VGKEKQIIHS ESNQVIGMKE TLFFCKGSHE 120
TRTQWVMHEL RLVASYPCQM PVADFAVYRI FQKNKMKTRR SHGKKPSSSS KLQRLVDVKA 180
SFFDFTVDFN HDDIGPPTPC SPCLSEGCSE ISSSKLD*
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 4e-24 | 13 | 154 | 15 | 166 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 4e-24 | 13 | 154 | 15 | 166 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 4e-24 | 13 | 154 | 15 | 166 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 4e-24 | 13 | 154 | 15 | 166 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 4e-24 | 13 | 154 | 18 | 169 | NAC domain-containing protein 19 |
| 3swm_B | 4e-24 | 13 | 154 | 18 | 169 | NAC domain-containing protein 19 |
| 3swm_C | 4e-24 | 13 | 154 | 18 | 169 | NAC domain-containing protein 19 |
| 3swm_D | 4e-24 | 13 | 154 | 18 | 169 | NAC domain-containing protein 19 |
| 3swp_A | 4e-24 | 13 | 154 | 18 | 169 | NAC domain-containing protein 19 |
| 3swp_B | 4e-24 | 13 | 154 | 18 | 169 | NAC domain-containing protein 19 |
| 3swp_C | 4e-24 | 13 | 154 | 18 | 169 | NAC domain-containing protein 19 |
| 3swp_D | 4e-24 | 13 | 154 | 18 | 169 | NAC domain-containing protein 19 |
| 4dul_A | 4e-24 | 13 | 154 | 15 | 166 | NAC domain-containing protein 19 |
| 4dul_B | 4e-24 | 13 | 154 | 15 | 166 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Up-regulated during xylem vessel element differentiation. {ECO:0000269|PubMed:20388856}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in xylem and phloem cells in roots and inflorescence stems (PubMed:20388856). Highly expressed in senescent leaves. Expressed in roots, and abscission and dehiscence tissues, such as axils of bracts and abscission zones in cauline leaves and siliques (PubMed:21673078). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}. |
