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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.17G178200.1.p | ||||||||
Common Name | GLYMA_17G178200, LOC102663028 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | LBD | ||||||||
Protein Properties | Length: 192aa MW: 21284.3 Da PI: 8.5882 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 107.2 | 1.3e-33 | 4 | 103 | 2 | 100 |
DUF260 2 CaaCkvlrrkCakd.CvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 C aCk++rr+C +d C++apyfpae+ ++fa+vh++FG nv ++l+ ++++ r ++++l+y+Aear+rdPv+G+vg+i++l+++ +++ Glyma.17G178200.1.p 4 CGACKYQRRRCYSDiCMFAPYFPAENIQRFACVHHVFGGGNVGSMLNITKPKLRGWVVKTLAYQAEARVRDPVHGCVGLIRELEENHRKV 93 ***********9999*************************************************************************** PP DUF260 91 kaelallkee 100 k++la+++ e Glyma.17G178200.1.p 94 KEDLAKAQME 103 *****99976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 20.713 | 2 | 104 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 6.1E-33 | 4 | 101 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
MSTCGACKYQ RRRCYSDICM FAPYFPAENI QRFACVHHVF GGGNVGSMLN ITKPKLRGWV 60 VKTLAYQAEA RVRDPVHGCV GLIRELEENH RKVKEDLAKA QMELARYMGP EFVRKLSPNY 120 GGESSLKGKF VAHLQPTTME LDFAPSIAID VDDLDKWDPF PPWETSFQNV GPSSSHAHGE 180 GGNRKGKGVA P* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 9e-30 | 2 | 107 | 10 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 9e-30 | 2 | 107 | 10 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: In embryo sac, detected as early as the one-nucleus stage. In older embryo sacs, highest expression in antipodal cells. {ECO:0000269|PubMed:17209126}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in leaves, leaf primordia, immature ears, immature tassels, whole ovules, silk and husk leaves. Found on the adaxial side of organs. {ECO:0000269|PubMed:17209126}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes the switch from proliferation to differentiation in the embryo sac. Negative regulator of cell proliferation in the adaxial side of leaves. Regulates the formation of a symmetric lamina and the establishment of venation. Interacts directly with RS2 (rough sheath 2) to repress some knox homeobox genes. {ECO:0000269|PubMed:17209126}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.17G178200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006601001.1 | 1e-144 | LOB domain-containing protein 24 | ||||
Refseq | XP_028208329.1 | 1e-144 | LOB domain-containing protein 24-like | ||||
Swissprot | Q32SG3 | 4e-32 | LBD6_MAIZE; LOB domain-containing protein 6 | ||||
TrEMBL | A0A0B2QZR9 | 1e-142 | A0A0B2QZR9_GLYSO; LOB domain-containing protein 6 | ||||
TrEMBL | K7MM90 | 1e-142 | K7MM90_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA17G20486.1 | 1e-143 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF19459 | 4 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G23660.2 | 5e-34 | LOB domain-containing protein 10 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.17G178200.1.p |
Entrez Gene | 102663028 |