PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.17G174900.1.p
Common NameGLYMA_17G174900, LOC100801638
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HSF
Protein Properties Length: 283aa    MW: 30982.6 Da    PI: 6.3045
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.17G174900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.92.2e-35121022101
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl+k+y +++d+++++++swse gn+fvv+++ +fak++LpkyFkh+nf+SFvRQLn+YgF+k+  ++         weF++++Fk+g++
  Glyma.17G174900.1.p  12 FLTKTYLLVDDPATDDVVSWSEGGNTFVVWKHADFAKDLLPKYFKHNNFSSFVRQLNTYGFRKTVPDK---------WEFANEYFKRGQT 92 
                          9***************************************************************9999.........************* PP

                          XXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkk 101
                          +ll +i+r+k
  Glyma.17G174900.1.p  93 DLLAEIRRRK 102
                          ********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.4E-38395IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467858.98E-348101IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.9E-598101IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-201235IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.2E-3112101IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-205062IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-206375IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009408Biological Processresponse to heat
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MSQQQRSTPA PFLTKTYLLV DDPATDDVVS WSEGGNTFVV WKHADFAKDL LPKYFKHNNF  60
SSFVRQLNTY GFRKTVPDKW EFANEYFKRG QTDLLAEIRR RKVVSPVTGK STGGGVNISA  120
SHSGGDDMGS TSTGSMEAAT AAGADISGEN EKLKKDNEKL SGELALAKKQ CEELVAFLRD  180
SLNVSPDVIE RIIRQGTCVS SNNDAVRFDA IINNDLDDDE NAVGECEPQQ PPPKGDNGES  240
LKLFGVWLKG QNGKENSIGK CRKRGRQDYP IAATAKELKT LV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B7e-27710125129Heat shock factor protein 1
5d5v_B7e-27710125129Heat shock factor protein 1
5d5v_D7e-27710125129Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.345520.0cotyledon| hypocotyl| root| seed coat| stem
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.17G174900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001340395.10.0heat stress transcription factor 35
RefseqXP_028211266.10.0heat shock factor protein HSF24-like
SwissprotP223351e-84HSF24_SOLPE; Heat shock factor protein HSF24
TrEMBLA0A445G8500.0A0A445G850_GLYSO; Heat shock factor protein HSF24
TrEMBLI1MVX90.0I1MVX9_SOYBN; Uncharacterized protein
STRINGGLYMA17G20070.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71143247
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.12e-70heat shock factor 4
Publications ? help Back to Top
  1. Scharf KD, et al.
    Three tomato genes code for heat stress transcription factors with a region of remarkable homology to the DNA-binding domain of the yeast HSF.
    EMBO J., 1990. 9(13): p. 4495-501
    [PMID:2148291]