PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.17G158300.1.p
Common NameGLYMA_17G158300, LOC100792451
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family AP2
Protein Properties Length: 685aa    MW: 76548.3 Da    PI: 6.8004
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.17G158300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.94e-16326385155
                  AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          s+y+GV++++++gr++A+++d  ++  g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  Glyma.17G158300.1.p 326 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqsRKgRQVYLGGYDMEEKAARAYDLAALKYWG 385
                          78*******************988886678446*************************98 PP
2AP2353.7e-11442487755
                  AP2   7 rwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          +++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Glyma.17G158300.1.p 442 TQHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 487
                          68999*******988532...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.18E-16326395IPR016177DNA-binding domain
PfamPF008476.8E-13326385IPR001471AP2/ERF domain
CDDcd000189.13E-22326393No hitNo description
SMARTSM003804.3E-29327399IPR001471AP2/ERF domain
PROSITE profilePS5103219.203327393IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.7E-16327394IPR001471AP2/ERF domain
PRINTSPR003677.9E-5328339IPR001471AP2/ERF domain
PRINTSPR003677.9E-5375395IPR001471AP2/ERF domain
CDDcd000186.71E-23428497No hitNo description
SMARTSM003806.4E-29429501IPR001471AP2/ERF domain
PROSITE profilePS5103218.386429495IPR001471AP2/ERF domain
PfamPF008475.3E-6442487IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-14444496IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.4E-15444495IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 685 aa     Download sequence    Send to blast
MKSMENDDTV DLNNQNNNWL GFSLSPQMNN NNIGVSTHTQ PSSAAAEVVP TSFYHTTPLS  60
SYGFYYGLEA ENVGLYSALP IMPLKSDGSL YGMEAVSRSQ AQAMATTSTP KLENFLGGEA  120
MGTPHHHYEC SATETMPLSL DSVFYNQPSR RDQNNNQTYQ NHVQHISTQQ QQQQELQAYY  180
STLRNHDMML EGSKQSQTSE NNNNNLQVQN MGDDAVSVPV AGLKSWGVRN FQASHAHESK  240
MIVPHHVEEN GGESGSIGSM AYGDLQSLSL SMSPSSQSSC VTSSHRASSA VIDSAAMDTK  300
KRGSEKVDQK QIVHRKSIDT FGQRTSQYRG VTRHRWTGRY EAHLWDNSCK KEGQSRKGRQ  360
VYLGGYDMEE KAARAYDLAA LKYWGPSTHI NFPLENYQNE LEEMKNMTRQ EYVAHLRRKS  420
SGFSRGASMY RGVTRSHRPT TTQHHQHGRW QARIGRVAGN KDLYLGTFST QEEAAEAYDI  480
AAIKFRGANA VTNFDITRYD VEKIMASSNL LSSELARRNQ ETTDNGTQYI DQNHNKPSAY  540
EDTQEAAILM HQKSCETQND QWKMVLYQQS SQQLEQNIPP RIESDRTNQS FSVALENMFH  600
QEVEESSKVR THVSNPSSLA TSLSSSRECS PDRTSLPMLS GVPSTSSKLL ATNPNNVNSW  660
DPSPHLRPAL TLPQMPVFAA WTDA*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed at the base of the stem. Expressed in stems. Expressed a low levels in crown roots and seeds (PubMed:21807632). Expressed in the stem region where adventitious (crown) root initiation occurs (PubMed:21481033). {ECO:0000269|PubMed:21481033, ECO:0000269|PubMed:21807632}.
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.17G158300.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2351910.0AC235191.1 Glycine max strain Williams 82 clone GM_WBb0012A18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014625550.10.0AP2-like ethylene-responsive transcription factor ANT isoform X3
SwissprotQ84Z021e-143CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLA0A0R0FDD80.0A0A0R0FDD8_SOYBN; Uncharacterized protein
STRINGGLYMA17G17010.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91634114
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-128AP2 family protein
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]