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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.17G158300.1.p | ||||||||
Common Name | GLYMA_17G158300, LOC100792451 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | AP2 | ||||||||
Protein Properties | Length: 685aa MW: 76548.3 Da PI: 6.8004 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 50.9 | 4e-16 | 326 | 385 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ g ++ ++++lg ++ +e+Aa+a++ a++k++g Glyma.17G158300.1.p 326 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqsRKgRQVYLGGYDMEEKAARAYDLAALKYWG 385 78*******************988886678446*************************98 PP | |||||||
2 | AP2 | 35 | 3.7e-11 | 442 | 487 | 7 | 55 |
AP2 7 rwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g Glyma.17G158300.1.p 442 TQHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 487 68999*******988532...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.18E-16 | 326 | 395 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 6.8E-13 | 326 | 385 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 9.13E-22 | 326 | 393 | No hit | No description |
SMART | SM00380 | 4.3E-29 | 327 | 399 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.203 | 327 | 393 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.7E-16 | 327 | 394 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.9E-5 | 328 | 339 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.9E-5 | 375 | 395 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.71E-23 | 428 | 497 | No hit | No description |
SMART | SM00380 | 6.4E-29 | 429 | 501 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.386 | 429 | 495 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.3E-6 | 442 | 487 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.5E-14 | 444 | 496 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.4E-15 | 444 | 495 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 685 aa Download sequence Send to blast |
MKSMENDDTV DLNNQNNNWL GFSLSPQMNN NNIGVSTHTQ PSSAAAEVVP TSFYHTTPLS 60 SYGFYYGLEA ENVGLYSALP IMPLKSDGSL YGMEAVSRSQ AQAMATTSTP KLENFLGGEA 120 MGTPHHHYEC SATETMPLSL DSVFYNQPSR RDQNNNQTYQ NHVQHISTQQ QQQQELQAYY 180 STLRNHDMML EGSKQSQTSE NNNNNLQVQN MGDDAVSVPV AGLKSWGVRN FQASHAHESK 240 MIVPHHVEEN GGESGSIGSM AYGDLQSLSL SMSPSSQSSC VTSSHRASSA VIDSAAMDTK 300 KRGSEKVDQK QIVHRKSIDT FGQRTSQYRG VTRHRWTGRY EAHLWDNSCK KEGQSRKGRQ 360 VYLGGYDMEE KAARAYDLAA LKYWGPSTHI NFPLENYQNE LEEMKNMTRQ EYVAHLRRKS 420 SGFSRGASMY RGVTRSHRPT TTQHHQHGRW QARIGRVAGN KDLYLGTFST QEEAAEAYDI 480 AAIKFRGANA VTNFDITRYD VEKIMASSNL LSSELARRNQ ETTDNGTQYI DQNHNKPSAY 540 EDTQEAAILM HQKSCETQND QWKMVLYQQS SQQLEQNIPP RIESDRTNQS FSVALENMFH 600 QEVEESSKVR THVSNPSSLA TSLSSSRECS PDRTSLPMLS GVPSTSSKLL ATNPNNVNSW 660 DPSPHLRPAL TLPQMPVFAA WTDA* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Highly expressed at the base of the stem. Expressed in stems. Expressed a low levels in crown roots and seeds (PubMed:21807632). Expressed in the stem region where adventitious (crown) root initiation occurs (PubMed:21481033). {ECO:0000269|PubMed:21481033, ECO:0000269|PubMed:21807632}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.17G158300.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC235191 | 0.0 | AC235191.1 Glycine max strain Williams 82 clone GM_WBb0012A18, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014625550.1 | 0.0 | AP2-like ethylene-responsive transcription factor ANT isoform X3 | ||||
Swissprot | Q84Z02 | 1e-143 | CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5 | ||||
TrEMBL | A0A0R0FDD8 | 0.0 | A0A0R0FDD8_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA17G17010.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF916 | 34 | 114 | Representative plant | OGRP112 | 17 | 209 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37750.1 | 1e-128 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.17G158300.1.p |
Entrez Gene | 100792451 |
Publications ? help Back to Top | |||
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