PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.17G155900.1.p

Common Name

GLYMA_17G155900, Glyma17g16720.1, LOC100802862

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

bHLH

Protein Properties

Length: 372aa MW: 41350.5 Da PI: 5.1759

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.17G155900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.4	4.5e-12	193	238	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h ++Er+RR+++ ++f L l+P + kK++Ka++L A+eY+k+L Glyma.17G155900.1.p 193 DHIMAERKRREKLSQSFIALAALVPGL-----KKMDKASVLGDAIEYVKEL 238 699**********************.....9**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.574	189	238	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.2E-9	193	238	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.6E-17	193	254	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.90E-13	194	242	No hit	No description
SuperFamily	SSF47459	2.09E-16	194	255	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	9.2E-14	195	244	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 372 aa Download sequence Send to blast
MMEELNKPMD GSATSWLSDL EMDDYNLFPD ECPLNLNMFD DREFLSQDIA SAFQEQTQTL 60 QQQSLSSECP SKTVSNSSTD ETTFDFERPS KLLKTTTSTS SNFDSSTITK TLSPKLSPSS 120 SFQSQILSFD NTNTQFYEFH CTLNPTQNEM VSVSVPQKGK PRFPTQTPKG SPKYQNFETK 180 TSHAKRSPAH AQDHIMAERK RREKLSQSFI ALAALVPGLK KMDKASVLGD AIEYVKELKE 240 RLTVLEEQSK KTRAESIVVL NKPDLSGDND SSSCDESIDA DSVSDSLFEV ESRVSGKEML 300 LKIHCQKQRG LLVKLLAEIQ SNHLFVANSS VLPFGNSILD ITIVAQMGES YNLTTKELAK 360 NLRVAALKIL S*

Sequence ? help Back to Top

Protein Sequence Length: 372 aa Download sequence Send to blast

MMEELNKPMD GSATSWLSDL EMDDYNLFPD ECPLNLNMFD DREFLSQDIA SAFQEQTQTL  60
QQQSLSSECP SKTVSNSSTD ETTFDFERPS KLLKTTTSTS SNFDSSTITK TLSPKLSPSS  120
SFQSQILSFD NTNTQFYEFH CTLNPTQNEM VSVSVPQKGK PRFPTQTPKG SPKYQNFETK  180
TSHAKRSPAH AQDHIMAERK RREKLSQSFI ALAALVPGLK KMDKASVLGD AIEYVKELKE  240
RLTVLEEQSK KTRAESIVVL NKPDLSGDND SSSCDESIDA DSVSDSLFEV ESRVSGKEML  300
LKIHCQKQRG LLVKLLAEIQ SNHLFVANSS VLPFGNSILD ITIVAQMGES YNLTTKELAK  360
NLRVAALKIL S*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5gnj_A	2e-12	193	267	8	80	Transcription factor MYC2
5gnj_B	2e-12	193	267	8	80	Transcription factor MYC2
5gnj_E	2e-12	193	267	8	80	Transcription factor MYC2
5gnj_F	2e-12	193	267	8	80	Transcription factor MYC2
5gnj_G	2e-12	193	267	8	80	Transcription factor MYC2
5gnj_I	2e-12	193	267	8	80	Transcription factor MYC2
5gnj_M	2e-12	193	267	8	80	Transcription factor MYC2
5gnj_N	2e-12	193	267	8	80	Transcription factor MYC2
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	197	202	ERKRRE
2	198	203	RKRREK

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.19541	0.0	flower\| hypocotyl\| pod\| root

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.17G155900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT031125	0.0	KT031125.1 Glycine max clone HN_CCL_79 bHLH transcription factor (Glyma17g16720.1) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003549987.1	0.0	transcription factor bHLH18
TrEMBL	I1MVF8	0.0	I1MVF8_SOYBN; BHLH transcription factor
STRING	GLYMA17G16720.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11069	12	38
Representative plant	OGRP656	15	73

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	2e-53	bHLH family protein

Link Out ? help Back to Top
Phytozome	Glyma.17G155900.1.p
Entrez Gene	100802862

Publications ? help Back to Top
Chai C, et al. Soybean transcription factor ORFeome associated with drought resistance: a valuable resource to accelerate research on abiotic stress resistance. BMC Genomics, 2015. 16: p. 596 [PMID:26268547]