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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Glyma.17G154100.1.p |
| Common Name | GLYMA_17G154100, LOC100796849 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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| Family |
NAC |
| Protein Properties |
Length: 343aa MW: 38461.7 Da PI: 5.1112 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Glyma.17G154100.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 169.2 | 1.3e-52 | 6 | 135 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88
lppGfrFhPtdeelv +yLk+kveg ++el evi+ +d+yk++Pw+Lp k + +++ ew+fF++rd+ky++g+r+nratk+gyWkatgk
Glyma.17G154100.1.p 6 LPPGFRFHPTDEELVGYYLKRKVEGIEIEL-EVIPVIDLYKFDPWELPeKsFLPKRDLEWFFFCPRDRKYPNGSRTNRATKAGYWKATGK 94
79****************************.99**************95334445667******************************** PP
NAM 89 dkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
d++v+++ + ++vg +ktLvfy grap g +tdWvmheyrl
Glyma.17G154100.1.p 95 DRKVVCQsNPSTVGYRKTLVFYLGRAPLGDRTDWVMHEYRL 135
*****9867788***************************98 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0008283 | Biological Process | cell proliferation |
| GO:0071365 | Biological Process | cellular response to auxin stimulus |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 343 aa
Download sequence Send
to blast |
MGGATLPPGF RFHPTDEELV GYYLKRKVEG IEIELEVIPV IDLYKFDPWE LPEKSFLPKR 60
DLEWFFFCPR DRKYPNGSRT NRATKAGYWK ATGKDRKVVC QSNPSTVGYR KTLVFYLGRA 120
PLGDRTDWVM HEYRLCDDLG QATPCFQGGF ALCRVIKKNE KASASQGEHK GKRAGSSSIN 180
GSDTSVKFSS EPFSNSGDAS SQASHLNNES RYSSPITSPY NVAPMGEFNQ ASVETTNPSN 240
FWISPDMILD SSKDYSQLQN AMAECFPRYD LPSVMAPWQS LEHPETSSSL SYSNFNGEVE 300
FADNLSQIGC TRQWNSMDLY GNGDVPYDGY DQVNSISYPE PF*
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 1e-51 | 5 | 162 | 16 | 169 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 1e-51 | 5 | 162 | 16 | 169 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 1e-51 | 5 | 162 | 16 | 169 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 1e-51 | 5 | 162 | 16 | 169 | NO APICAL MERISTEM PROTEIN |
| 4dul_A | 1e-51 | 5 | 162 | 16 | 169 | NAC domain-containing protein 19 |
| 4dul_B | 1e-51 | 5 | 162 | 16 | 169 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription factor involved in tissue reunion of wounded inflorescence stems. Required for the division of pith cells in the reunion process, which is dependent on polar-transported auxin and the wound-inducible hormones ethylene and jasmonate (PubMed:21911380). Binds to the promoters of XTH19 and XTH20 to induce their expression via auxin signaling. XTH19 and XTH20 are involved in cell proliferation in the tissue reunion process of incised stems (PubMed:25182467). Involved in hypocotyl graft union formation. Required for the auxin- mediated promotion of vascular tissue proliferation during hypocotyl graft attachment (PubMed:27986917). {ECO:0000269|PubMed:21911380, ECO:0000269|PubMed:25182467, ECO:0000269|PubMed:27986917}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Induced by wounding in the flowering stem. {ECO:0000269|PubMed:21911380}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AP015034 | 1e-106 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
