PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.17G133800.2.p

Common Name

GLYMA_17G133800, LOC100786965

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

MYB

Protein Properties

Length: 341aa MW: 38011.2 Da PI: 6.6552

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.17G133800.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.6	8.9e-16	80	127	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l++ + G +W+++++ g++R++k+c++rw +yl Glyma.17G133800.2.p 80 KGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLKRCGKSCRLRWTNYL 127 79********************************************97 PP
2	Myb_DNA-binding	53	7.9e-17	136	177	4	47
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 T+ E++l +d++++lG++ W++Ia++++ gRt++++k++w+++ Glyma.17G133800.2.p 136 LTEAEEQLVIDLHARLGNR-WSKIAARLP-GRTDNEIKNHWNTH 177 699**************.*****.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.8E-21	71	129	IPR009057	Homeodomain-like
PROSITE profile	PS51294	13.76	75	127	IPR017930	Myb domain
SuperFamily	SSF46689	4.12E-27	77	174	IPR009057	Homeodomain-like
SMART	SM00717	5.1E-13	79	129	IPR001005	SANT/Myb domain
Pfam	PF00249	9.7E-15	80	127	IPR001005	SANT/Myb domain
CDD	cd00167	8.76E-9	82	127	No hit	No description
PROSITE profile	PS51294	27.764	128	182	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	6.3E-25	130	182	IPR009057	Homeodomain-like
SMART	SM00717	2.7E-15	132	180	IPR001005	SANT/Myb domain
Pfam	PF00249	4.1E-15	135	177	IPR001005	SANT/Myb domain
CDD	cd00167	3.01E-11	137	178	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 341 aa Download sequence Send to blast
MILLHVYVIN NLDKKRRGLY IKVGGVWGFL GHYSLQASVG KTFAFSLGNC NIGQLARKWC 60 CFCVSAMGRQ PCCDKLGVKK GPWTAEEDKK LINFILTNGQ CCWRAVPKLA GLKRCGKSCR 120 LRWTNYLRPD LKRGLLTEAE EQLVIDLHAR LGNRWSKIAA RLPGRTDNEI KNHWNTHIKK 180 KLLKIGIDPV THEPLKKQAA ASSQDSSSSP AEHLPQPGNN LDDQVKETEG ILLNSEENSS 240 SSQAENSSGD DSLLLDSICS DDSLLNSMWL DETPLVEALW DTTPNLENTS NNMGLLPSWE 300 DNCAWLLDCQ DFGIHDFGFT CFNEIESHAL QTIGMKEEGH *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	4e-28	80	182	7	108	B-MYB
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed in mature flowers and decreases upon pollination. {ECO:0000269\|PubMed:15805488}.
Uniprot	TISSUE SPECIFICITY: Restricted to the petals, with the highest expression in the limb. {ECO:0000269\|PubMed:15805488}.

Functional Description ? help Back to Top
Source	Description
UniProt	R2R3 MYB-type transcription factor controlling the production of volatile benzoides in flowers by regulating the shikimate pathway, namely by activation of the 5-enol-pyruvylshikimate-3-phosphate synthase gene. This scent, mostly produced in the evening and night by the petals, attracts the pollinators. Anthocyanins production is not controlled by ODO1 as color and scent are produced at different stages of development. {ECO:0000269\|PubMed:15805488}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.17G133800.2.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Increases before the onset of volatile emission at the end of the light period, peaks at night and decreases when volatile emission declines early morning.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT098850	0.0	BT098850.1 Soybean clone JCVI-FLGm-16B22 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014624866.1	0.0	protein ODORANT1
Refseq	XP_028209493.1	0.0	protein ODORANT1-like
Swissprot	Q50EX6	1e-106	ODO1_PETHY; Protein ODORANT1
TrEMBL	A0A445G6A8	0.0	A0A445G6A8_GLYSO; Protein ODORANT1
TrEMBL	K7MLH0	0.0	K7MLH0_SOYBN; Uncharacterized protein
STRING	GLYMA17G14291.1	0.0	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12350.1	4e-88	myb domain protein 42

Link Out ? help Back to Top
Phytozome	Glyma.17G133800.2.p
Entrez Gene	100786965

Publications ? help Back to Top
Verdonk JC,Haring MA,van Tunen AJ,Schuurink RC ODORANT1 regulates fragrance biosynthesis in petunia flowers. Plant Cell, 2005. 17(5): p. 1612-24 [PMID:15805488]