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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.17G124100.1.p | ||||||||
Common Name | GLYMA_17G124100, LOC100800716 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ERF | ||||||||
Protein Properties | Length: 252aa MW: 28354.4 Da PI: 9.2198 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 49.3 | 1.2e-15 | 92 | 141 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ GVr+++ +grW AeI+d s ++ r +lg+f+ aeeAa a++ a++ l+g Glyma.17G124100.1.p 92 KFLGVRQRP-SGRWIAEIKDSS---QKLRLWLGTFDKAEEAALAYDCAARLLRG 141 789******.7*********42...36**********************99998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.58E-30 | 91 | 151 | No hit | No description |
PROSITE profile | PS51032 | 19.73 | 92 | 149 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.48E-19 | 92 | 150 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.7E-27 | 92 | 150 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.4E-32 | 92 | 155 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.6E-10 | 93 | 141 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.3E-7 | 93 | 104 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.3E-7 | 115 | 131 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MPLPHHRPHC YIKGFITHQC SPSSHIYAKI QPNPFFFLPT LMENIDTSKF SHQSQNQNKN 60 NIPLMSIEIL DKSYEKRVVN KVPKVANKSE KKFLGVRQRP SGRWIAEIKD SSQKLRLWLG 120 TFDKAEEAAL AYDCAARLLR GRNAKTNFPN NPGIMNTTHE EDCSILGKNP RAYQLLKHAV 180 MKNNHALYST VMPWKNQIMV RDEFDTLVEE TIVCSIPEQG SGCCGISFGS SKVYSSVVVA 240 PSFSASHDET S* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-15 | 91 | 149 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 3e-15 | 91 | 149 | 4 | 63 | ATERF1 |
3gcc_A | 3e-15 | 91 | 149 | 4 | 63 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.17G124100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT096863 | 0.0 | BT096863.1 Soybean clone JCVI-FLGm-15D24 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028210113.1 | 0.0 | ethylene-responsive transcription factor ERF084-like | ||||
TrEMBL | A0A0R0FBW6 | 0.0 | A0A0R0FBW6_SOYBN; Uncharacterized protein | ||||
TrEMBL | A0A445G5V8 | 0.0 | A0A445G5V8_GLYSO; Ethylene-responsive transcription factor RAP2-11 | ||||
STRING | GLYMA17G13320.1 | 1e-156 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12349 | 27 | 34 |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 2e-16 | related to AP2 11 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.17G124100.1.p |
Entrez Gene | 100800716 |