PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.17G116200.1.p
Common NameGLYMA_17G116200, LOC100792282
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C3H
Protein Properties Length: 527aa    MW: 60289.2 Da    PI: 6.3847
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.17G116200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.12.7e-0787109427
                          ---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                          ++C ff+  G+C+ GdrC+F Hgp
  Glyma.17G116200.1.p  87 VPCYFFFN-GFCNKGDRCSFLHGP 109
                          69******.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.164635IPR000571Zinc finger, CCCH-type
SMARTSM003560.0065634IPR000571Zinc finger, CCCH-type
PfamPF156634.8E-11862No hitNo description
PROSITE profilePS5010310.5023763IPR000571Zinc finger, CCCH-type
SMARTSM003560.433962IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.13183110IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.28E-683108IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-484109IPR000571Zinc finger, CCCH-type
PfamPF006424.8E-587109IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-688111IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 527 aa     Download sequence    Send to blast
MDEDSLKRYT DCVYFLASPL TCKKGAECEY RHNEIARLNP RDCWYWLSGQ CLNPTCAFRH  60
PPLDGHTGAP VPSEPTQTSL PANKTLVPCY FFFNGFCNKG DRCSFLHGPD DSIFNIKPVK  120
NENGSTDALN LENKAPSGNR TGVTSTPTDR SVAAPKNLSD LKHQPKEDHQ LELPKNVKQQ  180
GDYLELSASE YKEAAVSRSD SSIPDDGFVH NVPHLCTGQS SEEQVNSHIE PEEWWESSPH  240
SPGFDVLVHD EVENLGYEED SEYLPVVDRD EQELNDQYFR YEFIDPVEYD TICPEADILY  300
EQETYDGYRC LDRDLIHVNG RTVHAYATDA FLDPILSRKR IRTSAEMAAY DKNLDLRDHL  360
RRRREVNGPP VTGFLRRQES SPLMVQNQER HLRHGIEQRP SRRLTSQLGY SAIDSTGEVE  420
TLSIGNKRRL FRQSQAQQHR PRKNYIEKLP KRQFVSSKIS RKPVFKQRGL IHESSTFSGP  480
KTLAEIKEEK MKKNAEGSLH WKSTSTDFQD PKPLSEILKV KRTMDQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.17G116200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003550828.10.0zinc finger CCCH domain-containing protein 34
RefseqXP_028209548.10.0zinc finger CCCH domain-containing protein 34-like
TrEMBLA0A445G5I30.0A0A445G5I3_GLYSO; Zinc finger CCCH domain-containing protein 34
TrEMBLK7ML600.0K7ML60_SOYBN; Uncharacterized protein
STRINGGLYMA17G12510.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130921823
Representative plantOGRP24551220