PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.17G104800.1.p
Common NameGLYMA_17G104800, LOC100781997
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family TALE
Protein Properties Length: 346aa    MW: 39683.2 Da    PI: 5.7559
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.17G104800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox22.91.4e-072833152254
                          SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                           +yp++e++++L +++gL+ +q+ +WF N+R +
  Glyma.17G104800.1.p 283 WPYPTEEDKARLVQETGLQLKQINNWFINQRKR 315
                          59*****************************87 PP
2ELK29.22.1e-10236257122
                  ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                          ELKh+L+++Y+++++++++E++
  Glyma.17G104800.1.p 236 ELKHELKQGYKEKIVDIREEIL 257
                          9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012554.5E-1871115IPR005540KNOX1
PfamPF037902.2E-1773114IPR005540KNOX1
SMARTSM012565.3E-26124179IPR005541KNOX2
PfamPF037918.6E-19129178IPR005541KNOX2
SMARTSM011886.1E-4236257IPR005539ELK domain
PROSITE profilePS512139.969236256IPR005539ELK domain
PfamPF037897.7E-7236257IPR005539ELK domain
PROSITE profilePS5007111.612256319IPR001356Homeobox domain
SuperFamilySSF466895.99E-16258323IPR009057Homeodomain-like
SMARTSM003891.1E-10258323IPR001356Homeobox domain
CDDcd000862.02E-10259319No hitNo description
Gene3DG3DSA:1.10.10.609.1E-25263320IPR009057Homeodomain-like
PfamPF059209.0E-18276315IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MAFHDHLQHE IAFQRFTEEQ ELTENRDMQQ RLPPPTWLNN VNARQQNFLD TEKSVDRNNR  60
SESNCESEDL REYKADILGH PLYDQLLSAH VSCLRIATPV DQLPRIDAQL QQSQRVVEKY  120
SALAHNGVVD EKELDQFMTH YVLLLCAFKE QLQQHVRVHA MEAVMACWDL EQSLQSLTGV  180
SPGEGTGATM SDDEDDQAES NANLYEGSLD GGETLGFGPL VPTESERSLM ERVRHELKHE  240
LKQGYKEKIV DIREEILRKR RAGKLPGDTT SLLKAWWQSH SKWPYPTEED KARLVQETGL  300
QLKQINNWFI NQRKRNWHTN NPSSSSNSKS KRKSSAGEAS NQSFM*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.23760.0cotyledon| flower| leaf| root| seed coat
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.17G104800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006600707.10.0homeobox protein knotted-1-like 4 isoform X1
RefseqXP_028209871.10.0homeobox protein knotted-1-like 4 isoform X1
SwissprotP480001e-164KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLA0A0R0FAX60.0A0A0R0FAX6_SOYBN; Uncharacterized protein
TrEMBLA0A445G5090.0A0A445G509_GLYSO; Homeobox protein knotted-1-like 3 isoform A
STRINGGLYMA17G11330.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101734108
Representative plantOGRP16717148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.11e-159KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]