PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.17G101000.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | Dof | ||||||||
Protein Properties | Length: 345aa MW: 37550.2 Da PI: 9.5322 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 104.2 | 7.7e-33 | 1 | 49 | 14 | 62 |
zf-Dof 14 tntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++tkfCyynny+++qPryfCkaC+ryWt+GG++rnvPvG+grrknk+s+ Glyma.17G101000.2.p 1 MDTKFCYYNNYNVNQPRYFCKACQRYWTAGGTMRNVPVGAGRRKNKNST 49 69********************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50884 | 24.148 | 1 | 47 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 2.0E-20 | 1 | 46 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 6.9E-26 | 1 | 47 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 345 aa Download sequence Send to blast |
MDTKFCYYNN YNVNQPRYFC KACQRYWTAG GTMRNVPVGA GRRKNKNSTS HYRHITISEA 60 LQAARIDAQN GTHLPTLKGN GRVLSFGLDA HAPICDSMAS LMNLGEKKAL NGTRNGFHHG 120 FEDQRLPVPC KSGENGDDSS TTSSITISSP KGENNKSTFQ QQPLPQNHGF LPQVPCIPGV 180 PWPYTWNSPV PPPALCPSGF PLPFYPATFW NCGMPGNWNV PWFSSSSPAS NLKSPSSSPN 240 SPTLGKHSRD SDMIKQDSLH KEEASTPRNG SVLVPKTLRI DDPSEAAKSS IWATLGIKNE 300 SVSGGAMFKA FQSKKGEKNH VEASPMLMAN PAALSRSLNF HENS* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.18474 | 0.0 | cotyledon| flower| leaf| seed coat| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the vasculature of cotyledons and hypocotyls, leaves and roots. {ECO:0000269|PubMed:19619493}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. {ECO:0000250, ECO:0000269|PubMed:19619493}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.17G101000.2.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. {ECO:0000269|PubMed:19619493}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC235246 | 0.0 | AC235246.1 Glycine max strain Williams 82 clone GM_WBb0033G13, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001304489.2 | 0.0 | cyclic dof factor 3 | ||||
Refseq | XP_028210789.1 | 0.0 | cyclic dof factor 3-like | ||||
Swissprot | Q8LFV3 | 1e-103 | CDF3_ARATH; Cyclic dof factor 3 | ||||
TrEMBL | A0A0R0FLR7 | 0.0 | A0A0R0FLR7_SOYBN; Uncharacterized protein | ||||
TrEMBL | A0A445G4R2 | 0.0 | A0A445G4R2_GLYSO; Cyclic dof factor 3 | ||||
STRING | GLYMA17G10920.3 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47500.1 | 6e-96 | cycling DOF factor 3 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.17G101000.2.p |
Publications ? help Back to Top | |||
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