PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.17G101000.2.p

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

Dof

Protein Properties

Length: 345aa MW: 37550.2 Da PI: 9.5322

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.17G101000.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	104.2	7.7e-33	1	49	14	62
zf-Dof 14 tntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++tkfCyynny+++qPryfCkaC+ryWt+GG++rnvPvG+grrknk+s+ Glyma.17G101000.2.p 1 MDTKFCYYNNYNVNQPRYFCKACQRYWTAGGTMRNVPVGAGRRKNKNST 49 69********************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50884	24.148	1	47	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	2.0E-20	1	46	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	6.9E-26	1	47	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence Send to blast
MDTKFCYYNN YNVNQPRYFC KACQRYWTAG GTMRNVPVGA GRRKNKNSTS HYRHITISEA 60 LQAARIDAQN GTHLPTLKGN GRVLSFGLDA HAPICDSMAS LMNLGEKKAL NGTRNGFHHG 120 FEDQRLPVPC KSGENGDDSS TTSSITISSP KGENNKSTFQ QQPLPQNHGF LPQVPCIPGV 180 PWPYTWNSPV PPPALCPSGF PLPFYPATFW NCGMPGNWNV PWFSSSSPAS NLKSPSSSPN 240 SPTLGKHSRD SDMIKQDSLH KEEASTPRNG SVLVPKTLRI DDPSEAAKSS IWATLGIKNE 300 SVSGGAMFKA FQSKKGEKNH VEASPMLMAN PAALSRSLNF HENS*

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence Send to blast

MDTKFCYYNN YNVNQPRYFC KACQRYWTAG GTMRNVPVGA GRRKNKNSTS HYRHITISEA  60
LQAARIDAQN GTHLPTLKGN GRVLSFGLDA HAPICDSMAS LMNLGEKKAL NGTRNGFHHG  120
FEDQRLPVPC KSGENGDDSS TTSSITISSP KGENNKSTFQ QQPLPQNHGF LPQVPCIPGV  180
PWPYTWNSPV PPPALCPSGF PLPFYPATFW NCGMPGNWNV PWFSSSSPAS NLKSPSSSPN  240
SPTLGKHSRD SDMIKQDSLH KEEASTPRNG SVLVPKTLRI DDPSEAAKSS IWATLGIKNE  300
SVSGGAMFKA FQSKKGEKNH VEASPMLMAN PAALSRSLNF HENS*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.18474	0.0	cotyledon\| flower\| leaf\| seed coat\| stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in the vasculature of cotyledons and hypocotyls, leaves and roots. {ECO:0000269\|PubMed:19619493}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. {ECO:0000250, ECO:0000269\|PubMed:19619493}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.17G101000.2.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. {ECO:0000269\|PubMed:19619493}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC235246	0.0	AC235246.1 Glycine max strain Williams 82 clone GM_WBb0033G13, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001304489.2	0.0	cyclic dof factor 3
Refseq	XP_028210789.1	0.0	cyclic dof factor 3-like
Swissprot	Q8LFV3	1e-103	CDF3_ARATH; Cyclic dof factor 3
TrEMBL	A0A0R0FLR7	0.0	A0A0R0FLR7_SOYBN; Uncharacterized protein
TrEMBL	A0A445G4R2	0.0	A0A445G4R2_GLYSO; Cyclic dof factor 3
STRING	GLYMA17G10920.3	0.0	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47500.1	6e-96	cycling DOF factor 3

Link Out ? help Back to Top
Phytozome	Glyma.17G101000.2.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Corrales AR, et al. Multifaceted role of cycling DOF factor 3 (CDF3) in the regulation of flowering time and abiotic stress responses in Arabidopsis. Plant Cell Environ., 2017. 40(5): p. 748-764 [PMID:28044345] Renau-Morata B, et al. Ectopic Expression of CDF3 Genes in Tomato Enhances Biomass Production and Yield under Salinity Stress Conditions. Front Plant Sci, 2017. 8: p. 660 [PMID:28515731] Henriques R, et al. The antiphasic regulatory module comprising CDF5 and its antisense RNA FLORE links the circadian clock to photoperiodic flowering. New Phytol., 2017. 216(3): p. 854-867 [PMID:28758689]