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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.17G101000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | Dof | ||||||||
Protein Properties | Length: 472aa MW: 51763.7 Da PI: 6.698 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 125 | 2.3e-39 | 116 | 176 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k l+cprC+s++tkfCyynny+++qPryfCkaC+ryWt+GG++rnvPvG+grrknk+s+ Glyma.17G101000.1.p 116 PDKVLPCPRCKSMDTKFCYYNNYNVNQPRYFCKACQRYWTAGGTMRNVPVGAGRRKNKNST 176 78999*****************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 3.0E-29 | 109 | 173 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 3.2E-32 | 117 | 174 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.537 | 120 | 174 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 122 | 158 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 472 aa Download sequence Send to blast |
MHEIRDPAIR LFGQKIPFPE DVDKEEESAE DREQEMEEHE DEGDKDTRVE NVTKEELEAD 60 PPLDAEETKI SGTSPEAIVN PKTPSIEEET AKSKGGKSEK EQGDAANSQE KTLKKPDKVL 120 PCPRCKSMDT KFCYYNNYNV NQPRYFCKAC QRYWTAGGTM RNVPVGAGRR KNKNSTSHYR 180 HITISEALQA ARIDAQNGTH LPTLKGNGRV LSFGLDAHAP ICDSMASLMN LGEKKALNGT 240 RNGFHHGFED QRLPVPCKSG ENGDDSSTTS SITISSPKGE NNKSTFQQQP LPQNHGFLPQ 300 VPCIPGVPWP YTWNSPVPPP ALCPSGFPLP FYPATFWNCG MPGNWNVPWF SSSSPASNLK 360 SPSSSPNSPT LGKHSRDSDM IKQDSLHKEE ASTPRNGSVL VPKTLRIDDP SEAAKSSIWA 420 TLGIKNESVS GGAMFKAFQS KKGEKNHVEA SPMLMANPAA LSRSLNFHEN S* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.18474 | 0.0 | cotyledon| flower| leaf| seed coat| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the vasculature of cotyledons and hypocotyls, leaves and roots. {ECO:0000269|PubMed:19619493}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. {ECO:0000250, ECO:0000269|PubMed:19619493}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.17G101000.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. {ECO:0000269|PubMed:19619493}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT093948 | 0.0 | BT093948.1 Soybean clone JCVI-FLGm-24D21 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001304489.2 | 0.0 | cyclic dof factor 3 | ||||
Refseq | XP_028210789.1 | 0.0 | cyclic dof factor 3-like | ||||
Swissprot | Q8LFV3 | 1e-125 | CDF3_ARATH; Cyclic dof factor 3 | ||||
TrEMBL | A0A0R0FLR7 | 0.0 | A0A0R0FLR7_SOYBN; Uncharacterized protein | ||||
TrEMBL | A0A445G4R2 | 0.0 | A0A445G4R2_GLYSO; Cyclic dof factor 3 | ||||
STRING | GLYMA17G10920.3 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF625 | 34 | 147 | Representative plant | OGRP38 | 17 | 445 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47500.1 | 1e-113 | cycling DOF factor 3 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.17G101000.1.p |
Publications ? help Back to Top | |||
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