PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.17G099800.1.p
Common NameGLYMA_17G099800, LOC100812460
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 326aa    MW: 36215 Da    PI: 7.1923
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.17G099800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.91.7e-161764148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT+eEd  lv +++++G+g+W++++   g+ R+ k+c++rw +yl
  Glyma.17G099800.1.p 17 KGPWTPEEDISLVSYIQEHGPGNWRAVPTNTGLMRCSKSCRLRWTNYL 64
                         79********************************************97 PP
2Myb_DNA-binding49.69.3e-1670115148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg++T+ E++ ++++ ++lG++ W++Ia++++  Rt++++k++w+++l
  Glyma.17G099800.1.p  70 RGNFTEHEEKMIIHLQALLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 115
                          89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.1361264IPR017930Myb domain
SuperFamilySSF466892.02E-3014111IPR009057Homeodomain-like
SMARTSM007172.5E-121666IPR001005SANT/Myb domain
PfamPF002491.9E-151764IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-231871IPR009057Homeodomain-like
CDDcd001672.28E-101964No hitNo description
PROSITE profilePS5129423.90465119IPR017930Myb domain
SMARTSM007171.5E-1569117IPR001005SANT/Myb domain
PfamPF002492.4E-1470115IPR001005SANT/Myb domain
CDDcd001674.69E-1172115No hitNo description
Gene3DG3DSA:1.10.10.605.9E-2572120IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MHNMGRPPCC DKIGIKKGPW TPEEDISLVS YIQEHGPGNW RAVPTNTGLM RCSKSCRLRW  60
TNYLRPGIKR GNFTEHEEKM IIHLQALLGN RWAAIASYLP QRTDNDIKNY WNTHLKKKLK  120
QSDQSGSDEG VDHEGHSSSS SSNSHPKGQW ERRLQTDIQM AKKALCDALS LHKPATATTT  180
TLVVPDDATK PSSSSHHQPY NHASSSYASS YENISRLMEN WMKPPNSTNN SPGYYSSFSN  240
MVNNNTSTTG SSSSEGAHST TTTTTQDQGF DCFLTLNSSK QYYGSPSQTQ VPLTLLENWL  300
FDDGAAQCHE DLMNMSLEES TAGLF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C7e-261511925128MYB TRANSFORMING PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1114120LKKKLKQ
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expression in flowers increases as the flowers develop. {ECO:0000269|PubMed:1840903}.
UniprotTISSUE SPECIFICITY: Expressed in flowers, leaves and weakly in seed pods. {ECO:0000269|PubMed:1840903}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.17G099800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU6646451e-120KU664645.1 Glycine max cultivar Williams 82 transcription factor MYBJ3 (MYBJ3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003549675.20.0myb-related protein 306
RefseqXP_028209785.10.0myb-related protein 306-like
SwissprotP813921e-113MYB06_ANTMA; Myb-related protein 306
TrEMBLA0A445G4R90.0A0A445G4R9_GLYSO; Myb-related protein 306
TrEMBLI1MTT40.0I1MTT4_SOYBN; Uncharacterized protein
STRINGGLYMA17G10820.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101634115
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62470.24e-98myb domain protein 96
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]