PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

bHLH

Protein Properties

Length: 230aa MW: 24888.9 Da PI: 7.6694

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.17G095000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.3	8.7e-11	110	157	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++++P + +k Ka +L + ++YI+sLq Glyma.17G095000.1.p 110 SHSLAERARREKISERMKILQDIVPGC----NKVIGKALVLDEIINYIQSLQ 157 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.63E-10	104	161	No hit	No description
SuperFamily	SSF47459	9.03E-18	104	175	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.542	106	156	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.2E-18	106	176	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.6E-8	110	157	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.0E-10	112	162	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence Send to blast
MEPPLINDST FSSANPSLSE IWPSHFPTDH TPSNKRHLSP STDCGSNKHI KSSGSGSQDQ 60 NGALKAGEVD ATSVAGNKLP EQTAKPSSSE QPPKQDYIHV RARRGQATDS HSLAERARRE 120 KISERMKILQ DIVPGCNKVI GKALVLDEII NYIQSLQHQV EFLSMKLEAV NSRLSMSPTI 180 ECFPSKEVGT QPFDLAGIIF GSQPARGYAQ GSQPGWLHMQ IAGGFEKAT*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.29335	0.0	hypocotyl\| meristem\| root\| stem

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that forms a ternary complex with RSS3 and TIFY11A/JAZ9 to negatively regulate jasmonate-responsive genes. {ECO:0000269\|PubMed:23715469}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.17G095000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT031124	0.0	KT031124.1 Glycine max clone HN_CCL_216 bHLH transcription factor (Glyma17g10290.1) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003549652.1	1e-171	transcription factor bHLH79
Refseq	XP_028211695.1	1e-171	transcription factor bHLH79-like
Swissprot	Q69WS3	3e-70	BH094_ORYSJ; Transcription factor BHLH094
TrEMBL	A0A445G4H3	1e-169	A0A445G4H3_GLYSO; Transcription factor BHLH094 isoform A
TrEMBL	I1MTN2	1e-169	I1MTN2_SOYBN; BHLH transcription factor
STRING	GLYMA17G10290.1	1e-170	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1171	34	105
Representative plant	OGRP58	16	313

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G59640.1	2e-72	BIG PETAL P

Link Out ? help Back to Top
Phytozome	Glyma.17G095000.1.p
Entrez Gene	100799646

Publications ? help Back to Top
Chai C, et al. Soybean transcription factor ORFeome associated with drought resistance: a valuable resource to accelerate research on abiotic stress resistance. BMC Genomics, 2015. 16: p. 596 [PMID:26268547]