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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.17G090500.1.p | ||||||||
Common Name | GLYMA_17G090500, LOC100787505 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | bHLH | ||||||||
Protein Properties | Length: 162aa MW: 18199.1 Da PI: 9.4916 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 30.6 | 6.2e-10 | 17 | 67 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55 + +Er+RR +++s ++L + +P+++ +sk ls + L +A YIk+L+ Glyma.17G090500.1.p 17 KTIERNRRIHMKSLCFKLVSTIPSNYLKTSKDmLSQQDQLHLAATYIKHLR 67 689*********************664555555****************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.49E-9 | 4 | 78 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.24E-4 | 9 | 71 | No hit | No description |
PROSITE profile | PS50888 | 9.178 | 11 | 66 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.8E-8 | 16 | 80 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.0E-6 | 17 | 66 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006357 | Biological Process | regulation of transcription from RNA polymerase II promoter | ||||
GO:0090575 | Cellular Component | RNA polymerase II transcription factor complex | ||||
GO:0000977 | Molecular Function | RNA polymerase II regulatory region sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 162 aa Download sequence Send to blast |
MKNTNTNTSG SPKLDRKTIE RNRRIHMKSL CFKLVSTIPS NYLKTSKDML SQQDQLHLAA 60 TYIKHLRERI EKLKGEKEKA MNMMMMSNQS NNRIFNTGSE LPLLEIKDLG SGIEVMLISG 120 LNKNFMLYEV ISVLEEEGAE VVAANFSTVA DKIFLHVSCS G* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.38755 | 0.0 | leaf |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.17G090500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT095983 | 0.0 | BT095983.1 Soybean clone JCVI-FLGm-15G16 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001239892.1 | 1e-116 | uncharacterized protein LOC100787505 | ||||
TrEMBL | C6TEG0 | 1e-115 | C6TEG0_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA17G09810.1 | 1e-115 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6849 | 21 | 41 | Representative plant | OGRP1345 | 11 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20970.1 | 8e-17 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.17G090500.1.p |
Entrez Gene | 100787505 |