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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Glyma.17G088600.1.p |
Common Name | GLYMA_17G088600 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family |
MYB |
Protein Properties |
Length: 490aa MW: 55848.4 Da PI: 6.6742 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Glyma.17G088600.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 57.4 | 3.2e-18 | 206 | 252 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g WT +Ed ll+++v+q+G + W+ Ia+ ++ gR +kqc++rw+++l
Glyma.17G088600.1.p 206 KGQWTSDEDRLLIQLVEQYGLRKWSHIAQALP-GRIGKQCRERWHNHL 252
799*****************************.*************97 PP
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2 | Myb_DNA-binding | 58 | 2.1e-18 | 260 | 300 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
WT+eEd++l++a+++ G++ W+ Ia++++ gRt++++k++w+
Glyma.17G088600.1.p 260 IWTEEEDKILIQAHAEIGNK-WAEIAKKLP-GRTENSIKNHWN 300
6*******************.*********.***********8 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 490 aa
Download sequence Send
to blast |
MSPSSVSVTP LMDNIETNLT ENYASESKPM HLQENYLKPS MEDQLPFGTP STQGFLQDSH 60 HIDHLQFHVN GSSSSNPIFG VQTPNFDPFD HNVTCESAPP DFEAYECKLF AESNGSGHAH 120 LMDNFQYVGY SLNLPRTNQL DLMVANQSYV PFNALETKPL NFVVPDEVSC ISPPNYYKRV 180 GLNKNLRESP STRITFKARK KSNIVKGQWT SDEDRLLIQL VEQYGLRKWS HIAQALPGRI 240 GKQCRERWHN HLRPDIKKDI WTEEEDKILI QAHAEIGNKW AEIAKKLPGR TENSIKNHWN 300 ATKRRQYSKR KCRSKYPRGS LLQEYIKSLN LDKNPPIDYR KKSDKNANAK TNNNGKAAAQ 360 PQCADQFCPN GQIVPRYDFN EVPDFSLDDN LFEEGCSIDS LLDDMQSAST VDHEKDFDGK 420 IMQCAPTMDG KQSHHQVGIQ CVHVVDEHHH DHETEMVAHT MGNEVKKEFD LVEMMSHMNG 480 SHYSTHSPR*
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Expression --
Description ? help
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Source |
Description |
Uniprot | DEVELOPMENTAL STAGE: Expressed in cellularized but not uncellularized female gametophytes. {ECO:0000269|PubMed:16214903}. |
Uniprot | TISSUE SPECIFICITY: Expressed at high levels in the synergid cells of the female gametophyte, and at lower levels in the endosperm of young seeds and the trichomes of young leaves and sepals. {ECO:0000269|PubMed:16214903, ECO:0000269|PubMed:17693534}. |
Functional Description ? help
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Source |
Description |
UniProt | Transcription factor that binds to the motif 5'-GTAACNT-3' in the promoter of target genes (e.g. DD11 and DD18) and promotes their expression within synergid cells (e.g. in the filiform apparatus) in ovules (PubMed:16214903, PubMed:17693534, PubMed:18410484, PubMed:17937500). Required for the formation of the filiform apparatus during synergid cell differentiation in the female gametophyte (PubMed:16214903). Involved in pollen tube guidance to the micropyle (PubMed:16214903, PubMed:17937500, PubMed:23093426). {ECO:0000269|PubMed:16214903, ECO:0000269|PubMed:17693534, ECO:0000269|PubMed:17937500, ECO:0000269|PubMed:18410484, ECO:0000269|PubMed:23093426}. |