PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.17G082100.1.p
Common NameGLYMA_17G082100, LOC100808016
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 567aa    MW: 62473.5 Da    PI: 9.3419
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.17G082100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH551.5e-17266315255
                          HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          r +h++ E+rRR++iN++f+ Lrel+P++    ++K +Ka+ L ++veYI+ Lq
  Glyma.17G082100.1.p 266 RSKHSATEQRRRSKINDRFQMLRELIPHS----DQKRDKASFLLEVVEYIHFLQ 315
                          889*************************9....9******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.106.8E-24261337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-18262335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.564264314IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.61E-15266319No hitNo description
PfamPF000104.2E-15266315IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-13270320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 567 aa     Download sequence    Send to blast
MELPQARPLG TEGRKPMHDF LSLYSNSTAQ QDPRLPSQGS YLKTHDFLQP LERVETKACA  60
KEEATEEILS VVQKQRPPSV EHLLPGGIGT YSISHISYVN NNNNQRGVLK PETSSLFVRQ  120
ATSTDKNEEN SNCSSYTSSG FTLWEESSGK RGNTGKENNA GEKPSLGVTE SAAKLGQWTS  180
TERTSQSFSN NRHGGFSSRS SSQTTGQKNQ SFIEMMKSAR DSNAQDEVLE SEETFFLKKE  240
PSSNTQRELR VKVDAKSTDQ KPNTPRSKHS ATEQRRRSKI NDRFQMLREL IPHSDQKRDK  300
ASFLLEVVEY IHFLQEKVHK YEGSFQGWSN EPEKLMPWRN NDKPAETFQP RGTDNGSSPS  360
PTLLFASKVD EKNITISQTI PGSTQNVESG LSSATTPKTM DHHAGMMNKA FPIPIPSQLN  420
FFTPTQIGGP GGVVSQLTHR SASDAEKTKY QPSVECQTMT ATNEKLKEKE LTIEGGAISI  480
SSVYSKGLLH TLTHALQSSG VDLSQASISV QIELGKQANI RPSVPVSVCA AKDGDVHSNN  540
QKMMRSRVAS SGKSDQAVKK LKTCRS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.593010.0flower| hypocotyl| root| seed coat| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.17G082100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-128AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003549583.10.0transcription factor BIM1 isoform X2
RefseqXP_028211016.10.0transcription factor BIM1-like
TrEMBLA0A445G3X10.0A0A445G3X1_GLYSO; Transcription factor BIM1 isoform A
TrEMBLI1MT980.0I1MT98_SOYBN; Uncharacterized protein
STRINGGLYMA17G08980.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72523145
Representative plantOGRP13601747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.41e-124bHLH family protein