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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.17G076000.1.p | ||||||||
Common Name | GLYMA_17G076000, LOC100803040 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ARR-B | ||||||||
Protein Properties | Length: 682aa MW: 75164.2 Da PI: 5.1623 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 83.2 | 2.8e-26 | 209 | 262 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+W eLH++F+ a+++L G++kA Pk+il+lm+v+gLt+e+++SHLQkYRl Glyma.17G076000.1.p 209 KPRLVWDAELHRKFLAAINHL-GIDKAFPKRILDLMNVEGLTRENIASHLQKYRL 262 79*******************.********************************8 PP | |||||||
2 | Response_reg | 81.2 | 3.5e-27 | 13 | 121 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedale 88 vl vdD+++ +++l+++l+k +y +v+++ ++ +al++l++++ +Dl++ D++mp+mdG++ll+ + e++lp+i+++++g++e + + Glyma.17G076000.1.p 13 VLAVDDDETCLSVLENLLRKCQY-NVTTTNQAIKALDMLRKNRnkFDLVISDVNMPDMDGFKLLELVEL-EMDLPVIMLSGYGDKERVMR 100 799********************.***************998889*******************87655.669***************** PP HHHTTESEEEESS--HHHHHH CS Response_reg 89 alkaGakdflsKpfdpeelvk 109 + Ga d+l+Kp+ +eel + Glyma.17G076000.1.p 101 GVIHGACDYLTKPVRIEELQN 121 ******************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF036392 | 5.3E-148 | 1 | 681 | IPR017053 | Response regulator B-type, plant |
Gene3D | G3DSA:3.40.50.2300 | 6.0E-42 | 10 | 134 | No hit | No description |
SuperFamily | SSF52172 | 6.69E-36 | 10 | 134 | IPR011006 | CheY-like superfamily |
SMART | SM00448 | 1.3E-32 | 11 | 123 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 41.902 | 12 | 127 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 5.9E-24 | 13 | 121 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 3.58E-28 | 14 | 126 | No hit | No description |
PROSITE profile | PS51294 | 11.39 | 206 | 265 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.4E-27 | 206 | 266 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.69E-18 | 207 | 266 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.4E-24 | 209 | 262 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 682 aa Download sequence Send to blast |
MGVEDRFPVG MRVLAVDDDE TCLSVLENLL RKCQYNVTTT NQAIKALDML RKNRNKFDLV 60 ISDVNMPDMD GFKLLELVEL EMDLPVIMLS GYGDKERVMR GVIHGACDYL TKPVRIEELQ 120 NIWQHVVRRR IDSKDKNKTA SEGKACSMAG KLANEEKACY MAGECSQAMA SKSNADQNIK 180 LGQKRKEQSE DEEEEEYDQE NEEPSNQKKP RLVWDAELHR KFLAAINHLG IDKAFPKRIL 240 DLMNVEGLTR ENIASHLQKY RLGLKKSTQQ PSMVATLGNS DPYQQMDSIE GFRTLSGSGG 300 MISTTLPSYA SGGLFCRLNS PSGLRGINSS LLVQPVHSQN IDSRSIKTLG NMQLSMFSAN 360 QTSSLLQGIP TSIDGNQFQQ NNCSIGIRKL SPLDDLSSGF KVSSGFSNSR ATVRNPNNSL 420 HGLSNNHLLL QGNSPPTHNS GAFGNHSSLG AASVKTQSFD PGICELGYNR CNKSWQGTTQ 480 ISKFPANTSA VSNNDQLAQN NLNFSSSTFC SGNSPVDFSS TSVVAPPLED ARGKLRCQEG 540 LLENILLTSC YTQHQSWEAD NRGCNKEMSQ TFNTIKSVSP NGDTSSLGHS LDQNNTVSSK 600 RIDVSLVNPS VTQSSEDEKF YSMESIDGCI LQSMESQEDL MQNTFESLDD IMSEITKQEQ 660 NAIMLMDGEM EFDAYHVGSC I* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 7e-25 | 207 | 266 | 3 | 62 | ARR10-B |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.17G076000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006600557.1 | 0.0 | two-component response regulator ARR12 isoform X1 | ||||
Refseq | XP_028208240.1 | 0.0 | two-component response regulator ARR12-like isoform X1 | ||||
TrEMBL | A0A445G3J1 | 0.0 | A0A445G3J1_GLYSO; Two-component response regulator | ||||
TrEMBL | K7MKF2 | 0.0 | K7MKF2_SOYBN; Two-component response regulator | ||||
STRING | GLYMA17G08380.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF956 | 34 | 112 |
Representative plant | OGRP292 | 17 | 120 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G25180.1 | 1e-107 | response regulator 12 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.17G076000.1.p |
Entrez Gene | 100803040 |