PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.17G070800.1.p
Common NameGLYMA_17G070800, LOC100790871
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family AP2
Protein Properties Length: 371aa    MW: 42767.3 Da    PI: 6.6808
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.17G070800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.91.6e-1549108155
                  AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          s y+GV++++++gr++A+++d  ++n    k+ ++++lg ++ +e Aa a++ a++k++g
  Glyma.17G070800.1.p  49 SIYRGVTRHRWTGRYEAHLWDkHCWNEsqnKKgRQVYLGAYDNEEAAAHAYDLAALKYWG 108
                          57***********************55656446*************************98 PP
2AP251.62.3e-16151202155
                  AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  Glyma.17G070800.1.p 151 SKYRGVARHHHNGRWEARIGKvF---G-NKYLYLGTYATQEEAATAYDLAAIEYRG 202
                          89****99**********99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.32E-1749118IPR016177DNA-binding domain
CDDcd000184.23E-1149118No hitNo description
PfamPF008473.6E-1249108IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-1650117IPR001471AP2/ERF domain
SMARTSM003801.6E-2550122IPR001471AP2/ERF domain
PROSITE profilePS5103220.23150116IPR001471AP2/ERF domain
PRINTSPR003675.6E-65162IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-18151212IPR016177DNA-binding domain
CDDcd000181.97E-24151212No hitNo description
PfamPF008471.4E-12151202IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-17152211IPR001471AP2/ERF domain
SMARTSM003804.8E-25152216IPR001471AP2/ERF domain
PROSITE profilePS5103218.386152210IPR001471AP2/ERF domain
PRINTSPR003675.6E-6192212IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MAKKSQLRTQ KNNVTTNDDN NLNVTNTVTT KVKRTRRSVP RDSPPQRSSI YRGVTRHRWT  60
GRYEAHLWDK HCWNESQNKK GRQVYLGAYD NEEAAAHAYD LAALKYWGQD TILNFPLSNY  120
LNELKEMEGQ SREEYIGSLR RKSSGFSRGI SKYRGVARHH HNGRWEARIG KVFGNKYLYL  180
GTYATQEEAA TAYDLAAIEY RGLNAVTNFD LSRYIKWLKP NNNTNNVIDD QISINLTNIN  240
NNNNCTNSFT PSPDQEQEAS FFHNKDSLNN TIVEEVTLVP HQPRPASATS ALELLLQSSK  300
FKEMMEMTSV ANLSSTQMES ELPQCTFPDH IQTYFEYEDS NRYEEGDDLM FKFNEFSSIV  360
PFYQCDEFES *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.294170.0root
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.17G070800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-149AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003550676.10.0AP2-like ethylene-responsive transcription factor At1g16060
RefseqXP_028208979.10.0AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN41e-104AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLI1MSZ00.0I1MSZ0_SOYBN; Uncharacterized protein
STRINGGLYMA17G07860.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130034101
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.12e-93ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]