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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.17G062600.1.p | ||||||||
Common Name | GLYMA_17G062600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | AP2 | ||||||||
Protein Properties | Length: 578aa MW: 62166.2 Da PI: 7.9154 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 47 | 6.2e-15 | 299 | 350 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g Glyma.17G062600.1.p 299 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 350 57****************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 6.88E-14 | 150 | 266 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 7.2E-13 | 151 | 173 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.9E-21 | 151 | 270 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.909 | 151 | 264 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.9E-5 | 152 | 163 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.37E-9 | 219 | 266 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 7.2E-13 | 228 | 265 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.9E-5 | 246 | 266 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.76E-25 | 299 | 360 | No hit | No description |
Pfam | PF00847 | 7.7E-10 | 299 | 350 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 8.5E-18 | 299 | 360 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.9E-18 | 300 | 359 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.045 | 300 | 358 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.5E-33 | 300 | 364 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 578 aa Download sequence Send to blast |
MDSSSSSPPN STNNNSLAFS LSNHFPNPSS SPLSLFHSFT YPSLSLTGSN TVDAPPEPTA 60 GAGPTNLSIF TGGPKFEDFL GGSAATATTV ACAPPQLPQF STDNNNHLYD SELKSTIAAC 120 FPRALAAEQS TEPQKPSPKK TVDTFGQRTS IYRGVTRHRW TGRYEAHLWD NSCRREGQSR 180 KGRQVNNTAY VVERGVISNI LTVLCFVSLR GFCTWGIIAD SWGSFAHYAV SVYLGGYDKE 240 DKAARAYDLA ALKYWGPTTT TNFPISNYEK ELEEMKNMTR QEFVASLRRK SSGFSRGASI 300 YRGVTRHHQH GRWQARIGRV AGNKDLYLGT FSTQEEAAEA YDIAAIKFRG LNAVTNFDMS 360 RYDVKSIANS TLPIGGLSGK NKNSTDSASE SKSHEPSQSD GDPSSASSVT FASQQQPSSS 420 NLSFAIPIKQ DPSDYWSILG YHNTPLDNSG IRNTTSTVTT TTFPSSNNGT ASSLTPFNME 480 FSSAPSSTGS DNNAAFFSGG GIFVQQQTSH GHGNASSGSS SSSLSCSIPF ATPIFSLNSN 540 TSYESSAGYG NWIGPTLHTF QSHAKPSLFQ TPIFGME* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.33123 | 0.0 | cotyledon| hypocotyl| root| somatic embryo| stem| vegetative bud |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Present in inflorescence meristem and later in young floral mersitems. Expressed in sepal, petal, stamen and carpel primordia. In petal, progressively confined to petal margin and epidermal cells. Restricted to sporogenous tissue in the stamen and to the medial ridge of the carpel. Present in tissues that develop from this ridge, such as placenta and ovule primordia. In ovules, first expressed in distal part of the funiculus and the outer integument, before being confined to the funiculus. {ECO:0000269|PubMed:15988559}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, seedlings, inflorescence, and siliques. Also detected at low levels in leaves. {ECO:0000269|PubMed:15988559}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.17G062600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT031093 | 0.0 | KT031093.1 Glycine max clone HN_CCL_134 AP2-EREBP transcription factor (Glyma17g07010.1) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001242799.1 | 0.0 | AP2-like ethylene-responsive transcription factor AIL5 | ||||
Refseq | XP_028211618.1 | 0.0 | AP2-like ethylene-responsive transcription factor AIL5 | ||||
Swissprot | Q6PQQ3 | 1e-141 | AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5 | ||||
TrEMBL | A0A0R0F9G4 | 0.0 | A0A0R0F9G4_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA17G07010.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12562 | 27 | 35 | Representative plant | OGRP112 | 17 | 209 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57390.1 | 1e-132 | AINTEGUMENTA-like 5 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.17G062600.1.p |
Publications ? help Back to Top | |||
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