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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Glyma.17G056300.1.p |
Common Name | GLYMA_17G056300, LOC100813377 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family |
HD-ZIP |
Protein Properties |
Length: 210aa MW: 23720.2 Da PI: 9.604 |
Description |
HD-ZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Glyma.17G056300.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Homeobox | 59.2 | 6.7e-19 | 92 | 146 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
rk+ +++k+q Le+ F+++++++ +++ LA++l+L++rqV vWFqNrRa+ k
Glyma.17G056300.1.p 92 RKKLRLSKDQSSMLENSFKQHSTLNPVQKQALADQLNLKTRQVEVWFQNRRARTK 146
677889***********************************************98 PP
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2 | HD-ZIP_I/II | 109 | 3.3e-35 | 92 | 180 | 1 | 89 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89
+kk+rlsk+q+++LE+sF+++++L+p +K++la +L+l++rqv+vWFqnrRARtk+kq+E++ e Lk+++++l++en+rL+ke +eLr+
Glyma.17G056300.1.p 92 RKKLRLSKDQSSMLENSFKQHSTLNPVQKQALADQLNLKTRQVEVWFQNRRARTKLKQTEVNRELLKKHCQNLSDENKRLKKELQELRA 180
69*************************************************************************************93 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 210 aa
Download sequence Send
to blast |
MEDNNEECIA GLCLGLGLGL GSGHVPKKNK QKENKAVVCL DLAFELCPKG EKAVNNVNHH 60 HDKVERISLE RIHDYPNEKS TDSDNSNNNG CRKKLRLSKD QSSMLENSFK QHSTLNPVQK 120 QALADQLNLK TRQVEVWFQN RRARTKLKQT EVNRELLKKH CQNLSDENKR LKKELQELRA 180 VKVGPSPPCI QLSKTATLTM CSLCQKLVN*
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Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 140 | 148 | RRARTKLKQ |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KT031169 | 0.0 | KT031169.1 Glycine max clone HN_CCL_118 homeodomain/HOMEOBOX transcription factor (Glyma13g00310.1) mRNA, partial cds. |