PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.17G054700.1.p
Common NameGLYMA_17G054700, LOC100809090
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C3H
Protein Properties Length: 541aa    MW: 60257.4 Da    PI: 7.9311
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.17G054700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.32e-063193331226
                          TS--TTTTT-SS-SS CS
              zf-CCCH  12 tGtCkyGdrCkFaHg 26 
                          +G C++G++C+F H+
  Glyma.17G054700.1.p 319 SGSCPRGEKCNFQHD 333
                          7*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd073802.68E-486230No hitNo description
SMARTSM003560.0053309334IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-5310336IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-6311334IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.31312335IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-4312333IPR000571Zinc finger, CCCH-type
SMARTSM003560.0025341366IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.42E-5343368IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-4344368IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.413344367IPR000571Zinc finger, CCCH-type
PfamPF046776.3E-37382493IPR006768Cwf19-like, C-terminal domain-1
SuperFamilySSF541979.07E-7384452IPR011146HIT-like domain
Gene3DG3DSA:3.30.428.102.5E-4385448IPR011146HIT-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003824Molecular Functioncatalytic activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 541 aa     Download sequence    Send to blast
MAPRILLCGD VLGRLNQLFK RVSSVNKSAG PFDALLCVGQ FFPDSPEQLE DFTKYIEGGS  60
HFPLPTYFIG DYGVAAPKLL LQASKDSANQ GFKMDGFKVC HNLYWLKGSG KFPLFGLSVA  120
YLSGRKSSSG QQFGNYTEDD VDALRAIAEE PGVVDLFLTN EWPNGVTNRA ADSDIPAGLS  180
DGSDSTVSEL VQEIKPRYHI AGTKGIYYAR EPYSNVDAVH VTRFIGLASV GNRDKQKFIH  240
AISPTPASTM SSTEIAMKTT NTTLSPYTFK EKRTSPMDSA KRSSDSISDP QYWRYDVAQK  300
RQKHEAGHGD KLCFKFVSSG SCPRGEKCNF QHDTDAREQC MRGVCFDFLN KGKCERGPDC  360
NFKHSLQDEG NRLPSRRPGS GRSKECWFCL SSPNVESHLI ISIGENYYLA LAKGPLVEDH  420
VLIIPVEHMP STLSMPPESE IELSRFQNSL RSYCKSQEKE FIFFEWVSIR GTHANLQAIP  480
IPSSKAIMVE KVFNLAAQKL GFEFVAKKCK HYSSEHASYF IAYVVCFRPE SIKFLTLLFP  540
*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.191410.0somatic embryo| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.17G054700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-139AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006600456.10.0zinc finger CCCH domain-containing protein 64
SwissprotQ84WU90.0C3H64_ARATH; Zinc finger CCCH domain-containing protein 64
TrEMBLA0A0R0FJU90.0A0A0R0FJU9_SOYBN; Uncharacterized protein
STRINGGLYMA17G06240.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71321923
Representative plantOGRP534877