PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.17G050200.1.p
Common NameGLYMA_17G050200, LOC100807835
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRF
Protein Properties Length: 378aa    MW: 42704.2 Da    PI: 8.0762
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.17G050200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC77.81.1e-2476119144
                  WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                          d+epgrCrRtDGKkWRCs+++++++k+CErH+hrg++rsrk++e
  Glyma.17G050200.1.p  76 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVE 119
                          79***************************************987 PP
2QLQ56.86.9e-201347236
                  QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36
                         +FT++Q+q+L++Q+l+yKy+a++  +Pp+Ll+ i+
  Glyma.17G050200.1.p 13 PFTPSQWQELEHQALIYKYMASGISIPPDLLFTIK 47
                         8******************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.3E-111248IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088809.0E-151346IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.361348IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.9876120IPR014977WRC domain
PfamPF088791.3E-2077119IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MMNGRNVDTN RFPFTPSQWQ ELEHQALIYK YMASGISIPP DLLFTIKRTT HLDSSRLLPQ  60
HFGWNYLPMG LGRKIDPEPG RCRRTDGKKW RCSKEAYPDS KYCERHMHRG KNRSRKPVEV  120
LKTTPMTAAT NTDASTPTTI LSITKNSPVL FPTTHSLSHD TYHHHHHHHS HPQQHSSHSF  180
LYHSSRPSSG GVSLSFQDNS APLFLDTASC SQNNNNTDCR YVYGLKEEVD EHAFFTEPSG  240
TMRSFSASSM EDSWQLTPLT ISSSSSSKQR SCSGLSNDSN EYSYLQLQSL SGNNSKHPQQ  300
DQGCYISGSD IKCETFMKLG KEEPQKTVHR FFDEWPPKSR GSWLDLDDKS STTQLSISIP  360
TSTHDFATFS STTQRDG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.391220.0somatic embryo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.17G050200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003551131.20.0growth-regulating factor 1
RefseqXP_028210022.10.0growth-regulating factor 1-like
TrEMBLA0A445G2K50.0A0A445G2K5_GLYSO; Growth-regulating factor 4
TrEMBLK7MK100.0K7MK10_SOYBN; Uncharacterized protein
STRINGGLYMA17G05800.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40433459
Representative plantOGRP4601684
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.14e-52growth-regulating factor 5