PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.17G037500.1.p
Common NameGLYMA_17G037500, LOC778183
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 323aa    MW: 36548.5 Da    PI: 5.413
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.17G037500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.65.1e-172370148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         rg+WT +Ed+ l+++++ +G g+W+t a   g++Rt+k+c++rw++yl
  Glyma.17G037500.1.p 23 RGPWTVDEDLTLINYIATHGEGRWNTLALSAGLKRTGKSCRLRWLNYL 70
                         89********************************************97 PP
2Myb_DNA-binding50.54.8e-1676119146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          rg+ T eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++
  Glyma.17G037500.1.p  76 RGNITLEEQLLILELHSRWGNR-WSKIAQYLP-GRTDNEIKNYWRT 119
                          7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.3221870IPR017930Myb domain
SuperFamilySSF466891.57E-3020117IPR009057Homeodomain-like
SMARTSM007176.2E-142272IPR001005SANT/Myb domain
PfamPF002491.1E-152370IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-212477IPR009057Homeodomain-like
CDDcd001671.46E-102570No hitNo description
PROSITE profilePS5129422.91771125IPR017930Myb domain
SMARTSM007172.9E-1475123IPR001005SANT/Myb domain
PfamPF002498.0E-1576119IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-2278124IPR009057Homeodomain-like
CDDcd001674.69E-796119No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009620Biological Processresponse to fungus
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MDEKGARSSN TLLSCEDEMD LRRGPWTVDE DLTLINYIAT HGEGRWNTLA LSAGLKRTGK  60
SCRLRWLNYL RPDVRRGNIT LEEQLLILEL HSRWGNRWSK IAQYLPGRTD NEIKNYWRTR  120
VQKHAKQLKC DVNSKQFKDT MRYLWMPRLV ERIQAAATAP VTTTVTAAAT NNAFTYGNNL  180
NNNKFEVLNH KGRMGLTDPS VANNDFVGSH VTQSYTTPEN SSTGASSSDS FGTQVSTISD  240
LTEYYSVPEN TNSADYYQPS QISNYSDNCI TSPSGFLFPQ GLDLQSMDPN TPWNMQSGDS  300
SDNFWDVESM LFLEQQLMND NM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A4e-25201231103MYB PROTO-ONCOGENE PROTEIN
1h8a_C5e-252011724120MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.81890.0pod
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00334DAPTransfer from AT3G06490Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.17G037500.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt (NaCl). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0937110.0BT093711.1 Soybean clone JCVI-FLGm-17N7 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003550902.10.0transcription factor MYB108
RefseqXP_028209406.10.0transcription factor MYB108
SwissprotQ9FGY34e-90MYB78_ARATH; Transcription factor MYB78
TrEMBLA0A445G1D00.0A0A445G1D0_GLYSO; Transcription factor MYB78
TrEMBLK7MJT50.0K7MJT5_SOYBN; Uncharacterized protein
STRINGGLYMA17G04171.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87534125
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06490.14e-87myb domain protein 108
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]