PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.17G024400.3.p
Common NameGLYMA_17G024400
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C3H
Protein Properties Length: 403aa    MW: 42245 Da    PI: 9.0627
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.17G024400.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.21.6e-091838727
                         SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH  7 rffartGtCkyGdrCkFaHgp 27
                         ++f+rtG Ck+G +Ck++H++
  Glyma.17G024400.3.p 18 QYFMRTGLCKFGVSCKYHHPR 38
                         59*****************96 PP
2zf-CCCH361.2e-116184427
                         ---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH  4 elCrffartGtCkyGdrCkFaHgp 27
                         ++C+++ +tG+Ck+G++CkF+H++
  Glyma.17G024400.3.p 61 KECSYYVKTGQCKFGATCKFHHPQ 84
                         68********************97 PP
3zf-CCCH36.58.2e-12225250227
                          -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                          ++++C+++++tG+Ck+G +C+++H+p
  Glyma.17G024400.3.p 225 DQPECHHYMKTGECKFGLSCRYHHPP 250
                          689*********************97 PP
4zf-CCCH31.14.1e-10272296327
                          S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                           ++C ++ + G Ck+G+ CkF H++
  Glyma.17G024400.3.p 272 APPCTHYTQRGVCKFGSACKFDHPM 296
                          689********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.094739IPR000571Zinc finger, CCCH-type
SMARTSM003560.361638IPR000571Zinc finger, CCCH-type
PfamPF006423.5E-71838IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.075785IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-65885IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-55984IPR000571Zinc finger, CCCH-type
PfamPF006423.8E-96184IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-46383IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-4223250IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.666223251IPR000571Zinc finger, CCCH-type
PfamPF006423.1E-9225250IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5226252IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-5269296IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.69269297IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-7272296IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.63E-6273299IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.5E-5274294IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MLVTFLMCWF YLLMVKLQYF MRTGLCKFGV SCKYHHPRQA AGTATPVPLN YYGYPLRVAE  60
KECSYYVKTG QCKFGATCKF HHPQPAGVQA LAPSPVPPVS PLPVPVPSPM YPTVQIPSGP  120
SQQQYGVLVA RPPMLPGSVV QGPYGPMVVS PAMVPFSGWS PYQAPATNPV LPSSNTSNAG  180
STQFYGISQL PSSPATFTGP YQPSGSSIGP SGASQKEHPF PERPDQPECH HYMKTGECKF  240
GLSCRYHHPP DKSAPKATVT LSPVGLPLRP GAPPCTHYTQ RGVCKFGSAC KFDHPMGSLS  300
YSPSASSLAD MPVAPYPVGS SIGTLAPSSS SSELRPELGA GSNKESVASR MSSMSTSTGS  360
VGMTLSSVGP ISHSSTQPSA QSSSSPATTS ATTSSTVSHT SS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.331480.0flower| leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.17G024400.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-164AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003550189.10.0zinc finger CCCH domain-containing protein 58
RefseqXP_028211017.10.0zinc finger CCCH domain-containing protein 58-like
SwissprotQ84W911e-111C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLK7MJK70.0K7MJK7_SOYBN; Uncharacterized protein
STRINGGLYMA17G02720.30.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18550.11e-100C3H family protein