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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Glyma.17G002800.1.p |
| Common Name | GLYMA_17G002800, LOC100792622 |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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| Family |
NAC |
| Protein Properties |
Length: 404aa MW: 45803.4 Da PI: 7.012 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Glyma.17G002800.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 160.3 | 7.6e-50 | 47 | 172 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91
+pGfrFhPt+eelv +yL++kvegk++++ e i+ +d+y+++Pw+Lp+ ++ +ekewyf+++rd+ky++g+r+nr+t+sgyWkatg d+
Glyma.17G002800.1.p 47 MPGFRFHPTEEELVEFYLRRKVEGKRFNV-ELITFLDLYRYDPWELPALAAIGEKEWYFYVPRDRKYRNGDRPNRVTTSGYWKATGADRM 135
79***************************.89***************8778899************************************ PP
NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
+ +++ + +glkktLvfy+g+apkg +t+W+m+eyrl
Glyma.17G002800.1.p 136 IRTENFRSIGLKKTLVFYSGKAPKGIRTSWIMNEYRL 172
***********************************98 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 404 aa
Download sequence Send
to blast |
MAIAAANSSP TMSLSHSQSQ EDATTASTTN KPVDVDDNDD HEHDMVMPGF RFHPTEEELV 60
EFYLRRKVEG KRFNVELITF LDLYRYDPWE LPALAAIGEK EWYFYVPRDR KYRNGDRPNR 120
VTTSGYWKAT GADRMIRTEN FRSIGLKKTL VFYSGKAPKG IRTSWIMNEY RLPQHETERY 180
QKAEISLCRV YKRAGVEDHP SLPRCLPTRP SSSRASHDNN KKHNEMVQHN INMGFVGQLK 240
PPTTEHIVDK INETEASSDV NTALGLSKYN AAYRAAMGAL STTMALPVVP MDHEEGLMMM 300
QQQSKQAAAH VPTIFSAGPS SSNNSGVVNM DDLNRLMSYQ QQYYNVQSQS HPNQFSTLLM 360
QPSAVVSLSS LPNPLPPTFS DRLWDWNPIP EPPNQEYSNM SFK*
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 1e-55 | 48 | 193 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 1e-55 | 48 | 193 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 1e-55 | 48 | 193 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 1e-55 | 48 | 193 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
| 4dul_A | 1e-55 | 48 | 193 | 19 | 165 | NAC domain-containing protein 19 |
| 4dul_B | 1e-55 | 48 | 193 | 19 | 165 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AP015034 | 1e-150 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
