PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.17G002200.1.p
Common NameGLYMA_17G002200, LOC100803037
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ZF-HD
Protein Properties Length: 287aa    MW: 31796.8 Da    PI: 7.7735
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.17G002200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer100.71e-3172128259
          ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                          + vrY+eClkNhAa++Gg+a+DGCgEfmps g+eg+++al+C+AC CHRnFHR+eve 
  Glyma.17G002200.1.p  72 KVVRYRECLKNHAAAMGGNATDGCGEFMPS-GKEGSIEALNCSACHCHRNFHRKEVEG 128
                          679**************************9.999*********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047705.1E-2874126IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257749.0E-2574129IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015664.2E-3075126IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.03276125IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.602.7E-29199268IPR009057Homeodomain-like
SuperFamilySSF466899.38E-18200268IPR009057Homeodomain-like
TIGRFAMsTIGR015658.2E-26207263IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MELSSQEGEI PIPINSSTTY GHGNGHGHGH GHGLMIHHDH NHIISSSAPS NGIPTTMQQQ  60
EEEEEEEDRY KKVVRYRECL KNHAAAMGGN ATDGCGEFMP SGKEGSIEAL NCSACHCHRN  120
FHRKEVEGEP QHHLNINRRR LILGPHPEAL GYPTAAARSV PPHQMIMPYN IGIGHHLPSE  180
SDEQEDAAAG AGMVQLSSRP SSAQLVKKRF RTKFSQDQKD KMLNFAEKVG WKIQKQEESV  240
VQHFCQEIGV KRRVLKVWMH NNKHNLAKKI NPPTTTAPPP PPPPPP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh5_A4e-222062651675ZF-HD homeobox family protein
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.296620.0leaf
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Not detected in the meristem prior to exposure to long days (LDs), but after exposure to three LDs, stable accumulation on the flanks of the meristem adjacent to floral primordia, during floral induction. {ECO:0000269|PubMed:22319055}.
UniprotTISSUE SPECIFICITY: Mostly expressed in flowers and inflorescence. {ECO:0000269|PubMed:16428600}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Probably involved in the regulation of floral induction. {ECO:0000269|PubMed:22319055}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.17G002200.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by exposure to long days. {ECO:0000269|PubMed:22319055}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150342e-74AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003550152.10.0zinc-finger homeodomain protein 4
RefseqXP_028209571.10.0zinc-finger homeodomain protein 4-like
SwissprotQ9M9S05e-72ZHD4_ARATH; Zinc-finger homeodomain protein 4
TrEMBLA0A445G0360.0A0A445G036_GLYSO; Zinc-finger homeodomain protein 4
TrEMBLI1MQT90.0I1MQT9_SOYBN; Uncharacterized protein
STRINGGLYMA17G00590.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Representative plantOGRP9116237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.21e-74homeobox protein 31