PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.16G201300.2.p
Common NameGLYMA_16G201300, LOC100527856
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 206aa    MW: 23564.2 Da    PI: 9.3756
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.16G201300.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.71.8e-123180455
                         HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH  4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                         +h+e Er+RR+++ +   +Lr+llP       ++K s ++ + +A++YI++Lq
  Glyma.16G201300.2.p 31 MHKETERQRRQEMGNLCTTLRSLLPLeY---IKGKRSTSDHVNEAMNYINHLQ 80
                         7*************************77...*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.50E-112584No hitNo description
SuperFamilySSF474598.77E-162696IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.6872779IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-112995IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.1E-103180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.9E-53385IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0090575Cellular ComponentRNA polymerase II transcription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MARRNSGKHL LVGEKEDYNK LAMDDENKKW MHKETERQRR QEMGNLCTTL RSLLPLEYIK  60
GKRSTSDHVN EAMNYINHLQ SKVKQLQAKR DELVKVSNLM SNICPENIES SSTIHLPPLV  120
SIHPFPGGLE IMCSYSFGKS LFPMSRVLDI LLKEGLNVVS TTSIRRDGRF IHTIRSEYPI  180
HSNMAGTDYT ELQMKLMEII SSSRI*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.201520.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.16G201300.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0927390.0BT092739.1 Soybean clone JCVI-FLGm-11L13 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006598723.11e-152helix-loop-helix domain-containing protein isoform X2
RefseqXP_028206876.11e-152transcription factor bHLH36-like isoform X2
TrEMBLA0A445GL201e-151A0A445GL20_GLYSO; Transcription factor bHLH126 isoform B
TrEMBLK7MIP51e-151K7MIP5_SOYBN; Uncharacterized protein
STRINGGLYMA16G32610.31e-150(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25410.19e-36bHLH family protein