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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.16G201100.1.p | ||||||||
Common Name | GLYMA_16G201100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | Trihelix | ||||||||
Protein Properties | Length: 968aa MW: 108343 Da PI: 7.9038 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 29.5 | 1.9e-09 | 233 | 289 | 20 | 76 |
trihelix 20 rlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsess 76 + r+k ++ + +ev+++++++g++r +k+ kw+n+ ++++k+ e+e++++ e+ Glyma.16G201100.1.p 233 GITRAKTRADKDKEVAEFLKRHGVNRDAKTAGTKWDNMLGEFRKVYEWERGGEREQI 289 445788999999**************************************9965544 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF56112 | 9.54E-9 | 866 | 954 | IPR011009 | Protein kinase-like domain |
CDD | cd00180 | 1.57E-7 | 869 | 947 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 968 aa Download sequence Send to blast |
MGDKGDTTKK QQSQQQQPQS HHHHQQQQQT QQQISSSPKA PHEEPITEVR PIHHHHHQQL 60 SPVVVATGAP PFIPSPLYVS SGASSSPFEP QFETLNPKRP RYSGQWKQLL PSPPAQQKQS 120 QMAMLPTSES SPSPTTHTSS NPLQQQQPQT QTASSSDTSS SPTHSLPLLS GEGTKQEGEQ 180 IHQQLRKGKY VSPVWKPNEM LWLARAWKEQ YKGGGGVGGS DFSSRAEQQA ELGITRAKTR 240 ADKDKEVAEF LKRHGVNRDA KTAGTKWDNM LGEFRKVYEW ERGGEREQIG KSYFRLSPYE 300 RKLHRLPASF DEDVFEELAQ FMGSRMRSSH GRAVSSLGSG DEARTALAAT RALPPPPRPF 360 KDDEIPLSAR TKQLALTSGG EPFFHGSRGG LLGLDTLLDV TGSSSSSSKE LRRIGKIRMS 420 WEESVSLWAE EGEVHRGRVK LQSSSFLNAD ELTCFDDAMV PCPMEYFEDG PLKGFSVDRF 480 VSGQQVKVFG RRKSSPASDS SSAGFAERVQ FPSKALPIRS IATLDFRDPS DYYMECFLRA 540 SPQTLPSLLE LKRHLQEPPP EDLRFPLRRD VYEDLPQGKE LFFTTTSEPL DCRAIMFEIV 600 GPIIRPSLNP TSSSRDSFIP LWDDCINRVI QKFCPENLTL IRKPTSSPPP TATTAAATAT 660 ESTNLLLQDQ WPNITGFVNN YCLWRGEETH QLTETQPNPS TTLVAKLLWT YMDLPYILGY 720 YAVANTVTFC AMSRSQEGII NRTDLLELNL TTPTERLKAL VPCFRIGLLL PLLSKRCSSI 780 ISNSKGFAYS DFERVCYGNG VVTEVTPNTC TRMFSEKRKW MAVKEVYEIL DHRIPHAEVL 840 VGVSERELGL SFKPRGCRVR PGNCEELVEA LKYVTKALVA LHDLSFMHRD LKWEKVMRRM 900 DSREEEWFVC GTCGLGGVPK MLRELQSRCM EQNPEQRPTA ADCYHHLLQL QSSLSAATAA 960 AGGGIMM* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.16G201100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015044 | 0.0 | AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006599639.1 | 0.0 | uncharacterized protein LOC100793127 | ||||
TrEMBL | K7MIP0 | 0.0 | K7MIP0_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA16G32580.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11857 | 28 | 31 |
Representative plant | OGRP9479 | 6 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33550.1 | 1e-07 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.16G201100.1.p |