PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.16G200700.2.p
Common NameGLYMA_16G200700, LOC100779279
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MIKC_MADS
Protein Properties Length: 236aa    MW: 27492.9 Da    PI: 8.9943
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.16G200700.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF94.45.1e-30959151
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         +rienk+nrqvtfskRr g+lKKA+ELSvLCdaeva+iifss+gkl+ yss
  Glyma.16G200700.2.p  9 ERIENKINRQVTFSKRRSGLLKKAFELSVLCDAEVALIIFSSRGKLFQYSS 59
                         69***********************************************96 PP
2K-box69.31.2e-2374172199
                K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqee 90 
                          y ks++ +  e++++s+++e+ kL++++e+L+ +qRh++Ge+Le+Ls+k+Lq+Le+qL+  l   R+++++ ll+  +el++k ++l++ 
  Glyma.16G200700.2.p  74 YSKSQTDDSLEHDSQSSYHEFLKLRAKYESLELTQRHFQGEELEPLSFKDLQSLEKQLDITLALTRQHQTKKLLARADELREKVHKLEDL 163
                          56778888889999**************************************************************************** PP

                K-box  91 nkaLrkkle 99 
                          nk+L++k +
  Glyma.16G200700.2.p 164 NKQLESKEK 172
                          ****99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.8E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.539161IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.72E-32276IPR002100Transcription factor, MADS-box
CDDcd002652.96E-40275No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-30323IPR002100Transcription factor, MADS-box
PfamPF003191.4E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-303859IPR002100Transcription factor, MADS-box
PfamPF014861.1E-1884170IPR002487Transcription factor, K-box
PROSITE profilePS5129712.95187177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MGRGRVVLER IENKINRQVT FSKRRSGLLK KAFELSVLCD AEVALIIFSS RGKLFQYSST  60
DINKIIERYR QCRYSKSQTD DSLEHDSQSS YHEFLKLRAK YESLELTQRH FQGEELEPLS  120
FKDLQSLEKQ LDITLALTRQ HQTKKLLARA DELREKVHKL EDLNKQLESK EKDEFSSFIL  180
DNNNYIQVHA TQGDQFESGT TLNTWFQRQD SKEKAIDTKT DGSQSSHNKN KGWLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-24169169MEF2C
5f28_B2e-24169169MEF2C
5f28_C2e-24169169MEF2C
5f28_D2e-24169169MEF2C
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.16G200700.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0936810.0BT093681.1 Soybean clone JCVI-FLGm-14A18 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006598725.11e-171uncharacterized protein LOC100779279 isoform X1
RefseqXP_028206139.11e-171truncated transcription factor CAULIFLOWER D-like isoform X2
TrEMBLA0A445GL111e-170A0A445GL11_GLYSO; MADS-box transcription factor 6 isoform B
TrEMBLK7MIN71e-170K7MIN7_SOYBN; Uncharacterized protein
STRINGGLYMA16G32540.11e-167(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45650.13e-61AGAMOUS-like 6