PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.16G196200.1.p
Common NameGLYMA_16G196200, LOC100812267
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HSF
Protein Properties Length: 349aa    MW: 37759 Da    PI: 6.5169
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.16G196200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.61.3e-35331242102
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl+k+y++++d++++++isw+++g++f+v++++ fa+++Lpk+Fkh+nf+SFvRQLn+YgF+kv  ++         weF++++F++g+k
  Glyma.16G196200.1.p  33 FLTKTYQLVDDQSIDDVISWNDDGSTFIVWNPTVFARDLLPKFFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFSNDYFRRGEK 113
                          9*****************************************************************99.........************* PP

                          XXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkks 102
                          +ll++i+r+k 
  Glyma.16G196200.1.p 114 RLLCEIQRRKI 124
                          ********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.5E-3722117IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.0E-5529122IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.69E-3430122IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004475.5E-3233122IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-193356IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-197183IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043407296IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-198496IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MAPPPPVEHN GDSAATASAS ASAESQRSIP TPFLTKTYQL VDDQSIDDVI SWNDDGSTFI  60
VWNPTVFARD LLPKFFKHNN FSSFVRQLNT YGFRKVVPDR WEFSNDYFRR GEKRLLCEIQ  120
RRKISSPAPS PTAPTTVTVP MPLTAIPIIS PSNSGEEQVI SSNSSPLRAP AELLDENERL  180
RKENVQLTKE LAEMRSLCNN IYSLMSSYGN KNGNSNGSYQ TDGGAGGAQG SRESGMTAVK  240
PLDLMPVKRS SGEDAADTVP KEINLIPNPK LFGVAIGAKR AREGGGGSGS GRDCGGGGGG  300
GEEDTLLRLH HVGSADVKSE PLDCQNHREN QETPWLSPCH RTNQRVCN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d8k_B1e-22331265109Heat shock factor protein 2
5d8l_B1e-22331265109Heat shock factor protein 2
5d8l_D1e-22331265109Heat shock factor protein 2
5d8l_F1e-22331265109Heat shock factor protein 2
5d8l_H1e-22331265109Heat shock factor protein 2
5hdg_A1e-223312210110Heat shock factor protein 1
5hdn_A1e-223312210110Heat shock factor protein 1
5hdn_B1e-223312210110Heat shock factor protein 1
5hdn_C1e-223312210110Heat shock factor protein 1
5hdn_D1e-223312210110Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.310680.0cotyledon| leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.16G196200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001340394.10.0heat stress transcription factor 32
RefseqXP_028207547.10.0heat stress transcription factor B-2a-like
TrEMBLA0A445GKL80.0A0A445GKL8_GLYSO; Heat stress transcription factor B-2a
TrEMBLI1MPZ90.0I1MPZ9_SOYBN; Uncharacterized protein
STRINGGLYMA16G32070.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20373482
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.12e-85heat shock transcription factor B2A